Detail information of GWHGAAZE014801


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrBAE46384.12.2219E-113ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Panax ginseng]
Swissprottr|Q40250|RBS_LACSA3E-111Ribulose bisphosphate carboxylase small chain, chloroplastic (Precursor)
trEMBLtr|Q3LFQ4|Q3LFQ4_PANGI8E-114Ribulose bisphosphate carboxylase small chain {ECO:0000256|RuleBase:RU003627}
TAIR10AT5G38430.11E-83Ribulose bisphosphate carboxylase (small chain) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1917582119177918-
GWHAAZE00000004mRNA1917582119177918-
GWHAAZE00000004exon1917582119176060-
GWHAAZE00000004exon1917733219177466-
GWHAAZE00000004exon1917772719177918-
GWHAAZE00000004CDS1917772719177918-
GWHAAZE00000004CDS1917733219177466-
GWHAAZE00000004CDS1917582119176060-
Transcript Sequence

Network for GWHGAAZE014801

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12338.9RbcS6492.60E-23
PF00101.21RuBisCO_small741823.30E-40
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01602rbcS Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Glyoxylate and dicarboxylate metabolismmap00630
Carbon fixation in photosynthetic organismsmap00710

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6545.514
SRR3591706second leaf58415.391
SRR3591707mature leaf39284.820
SRR3591708Shoot apex18050.563
SRR3591709Stem4196.541
SRR3591710White floral bud209.348
SRR3591711White flower457.716
SRR3591712Green floral bud247.093
SRR3591713Yellow flower141.143
SRP173429 SRR8316895Juvenile bud stage 3990.399
SRR8316896Juvenile bud stage 2480.636
SRR8316897Juvenile bud stage 2231.305
SRR8316894Third green stage 745.745
SRR8316900Third green stage 680.060
SRR8316901Third green stage 670.207
SRR8316898Complete white stage 49.761
SRR8316899Complete white stage 136.372
SRR8316903Complete white stage 139.490
SRR8316902Silver flowering stage111.454
SRR8316904Silver flowering stage112.509
SRR8316905Silver flowering stage76.165
SRR8316906Gold flowering stage 258.359
SRR8316907Gold flowering stage 226.780
SRR8316908Gold flowering stage 496.999
SRP132670SRR6706286Control767.333
SRR6706287Light intensity 50%467.429
SRR6706288Light intensity 20%409.398
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11512.348
CNS0095593Slightly white alabastrum(diploid) 2560.056
CNS0095594Slightly white alabastrum(diploid) 31043.740
CNS0095595Whole white alabastrum(diploid) 2341.027
CNS0095596Whole white alabastrum(diploid) 3338.171
CNS0095597Whole white alabastrum(diploid) 4207.130
CNS0095598Silvery flower (diploied) 11767.257
CNS0095599Silvery flower (diploied) 21654.953
CNS0095600Silvery flower (diploied) 3287.560
CNS0095601Golden flower (diploid) 11777.182
CNS0095602Golden flower (diploid) 2892.393
CNS0095603Golden flower (diploid) 3869.596
CNS0095604Slightly white alabastrum(tetraploid) 11258.658
CNS0095605Slightly white alabastrum(tetraploid) 21721.813
CNS0095606Slightly white alabastrum(tetraploid) 31888.348
CNS0095607Whole white alabastrum(tetraploid) 1310.191
CNS0095608Whole white alabastrum(tetraploid) 2246.422
CNS0095609Whole white alabastrum(tetraploid) 3502.978
CNS0095610Silvery flower (tetraploid) 1451.599
CNS0095611Silvery flower (tetraploid) 2757.092
CNS0095612Silvery flower (tetraploid) 3492.846
CNS0095613Golden flower (tetraploid) 1289.466
CNS0095614Golden flower (tetraploid) 2304.268
CNS0095615Golden flower (tetraploid) 3328.146
CRA001975CRR073297Stem 16203.032
CRR073298Stem 24440.048
CRR073299Stem 39297.534
CRR073300Leaf 1186.201
CRR073301Leaf 2400.439
CRR073302Leaf 3617.668
CRR073303Juvenile bud 1137.826
CRR073304Juvenile bud 2403.123
CRR073305Juvenile bud 3152.307
CRR073306Third green 1267.698
CRR073307Third green 2288.158
CRR073308Third green 3227.172
CRR073309Second white 1608.147
CRR073310Second white 2177.083
CRR073311Second white 3110.953
CRR073312Silver flowering 1100.276
CRR073313Silver flowering 2147.275
CRR073314Silver flowering 3168.708
CRR073315Gold flowering 181237.234
CRR073316Gold flowering 272316.852
CRR073317Gold flowering 376370.883
CRR073318Tawny withering 11492.687
CRR073319Tawny withering 22218.891
CRR073320Tawny withering 31224.304