Gene detail

Detail information of GWHGAAZE014804

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP02779.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9XF43\|KCS6_ARATH	3-ketoacyl-CoA synthase 6
trEMBL	tr\|A0A068U3P4\|A0A068U3P4_COFCA	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}
TAIR10	AT1G68530.1	3-ketoacyl-CoA synthase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	19303277	19304767	-
GWHAAZE00000004	mRNA	19303277	19304767	-
GWHAAZE00000004	exon	19304630	19304767	-
GWHAAZE00000004	exon	19303685	19304584	-
GWHAAZE00000004	exon	19303277	19303594	-
GWHAAZE00000004	CDS	19304630	19304767	-
GWHAAZE00000004	CDS	19303685	19304584	-
GWHAAZE00000004	CDS	19303277	19303594	-

Transcript Sequence
>GWHTAAZE014818 ATGCCGCAAACACTACCTGACTTCTCCACCTCCGTCAAGCTCAAGTACGTAAAACTCGGTTATCAATACCTCGTCAACCACATCCTCACCCTCACTCTCATCCCCATAATGTCCGCTCTTGCCCTTCATCTCCTCAACGACATCGTACACATCCTCCTCACCTCCTTCCTCATTATCTTCGTCTCCACCATCTATTTCATGTCCAAACCCCGACCCATTTACCTCGTTGATTACGCCTGTTACAAGCCCCCCATAACTTGTCGCGTCCCCTTCGCCACTTTCATGGAACACTCCCGCCTTATTCTCAAAGACAATCCCAAGAGCGTCGACTTCCAAATGCGTATCCTCGAGCGATCTGGCCTCGGGGAGGAAACCTGCCTGCCCCCCGCAATTCACTACATTCCCCCGAATCCGTCTATGGAAGATGCTAGGGGCGAGGCTAGAATTGTAATTTTTTCTGCCATCGATTCGCTCATGGCCAAAACTAATCTCAAGCCCAAAGATATCGATATACTAATAGTTAATTGCAGCCTTTTTTCGCCGACGCCTTCACTATCAGCTATGGTGGTGAACAAGTACAAATTAAGAAGTAATATTAAGAGCTTTAATTTGTCCGGTATGGGATGTAGCGCGGGGTTAATTTCAATTGACTTAGCGCGTGATCTTCTTCAGGTTCGTCCGAATTCGAACGCACTCGTTGTAAGTACTGAAATAATCACACCGAATTACTATAAGGGGAAAGAGAGAGCTATGCTATTACCCAATTGCCTCTTCCGTATGGGCGGGGCAGCTATTTTGCTGTCAAATAAACGCCGAGAAAAATCTCGAGCTAAGTACAAATTAGTTCATGTTGTGCGTACGCACAAAGGTGGCGATGATAAGGCCTATAAATGCGTGTACGAAGAAGAGGACCCACAGGGTGAAGTTGGGATCAACCTGTCGAAAGATCTGATGGTTATAGCCGGAGAATCGCTAAAGTCGAACATAACGACCATCGGTCCCCTCGTTCTCCCTGCATCAGAGCAGCTATTATTTCTCGCGGGCGGACGCGCGGTTATTGATGAGCTTCAGAAGAATTTACAGCTGTCGGCCGAACACGTGGAGGCGTCGAGGATGACTCTCCACAGGTTTGGGAACACGTCATCCTCATCGTTGTGGTATGAGTTGAGTTATATCGAGGCAAAGGGGAGGATGAAGAAGGGGGATAGAATTTGGCAAATTGCGTTTGGGAGTGGGTTTAAGTGTAATAGTGCGGTTTGGAAGTGTAACCGGACGATCAAAACTCCGACCGATGGGCCTTGGATTGATTGTATCCATAGGTATCCCGTGCACATACCGGATGTTGTGAAGCTGTGA

Network for GWHGAAZE014804

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08392.13	FAE1_CUT1_RppA	65	347	3.40E-135
PF08541.11	ACP_syn_III_C	349	421	1.40E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15397	KCS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid elongation	map00062
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0016020	cellular_component	membrane
GO:0003824	molecular_function	catalytic activity
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.808
	SRR3591706	second leaf	63.278
	SRR3591707	mature leaf	90.390
	SRR3591708	Shoot apex	44.031
	SRR3591709	Stem	10.993
	SRR3591710	White floral bud	35.945
	SRR3591711	White flower	11.085
	SRR3591712	Green floral bud	81.519
	SRR3591713	Yellow flower	2.271
SRP173429	SRR8316895	Juvenile bud stage	24.939
	SRR8316896	Juvenile bud stage	41.916
	SRR8316897	Juvenile bud stage	15.989
	SRR8316894	Third green stage	19.489
	SRR8316900	Third green stage	83.035
	SRR8316901	Third green stage	71.342
	SRR8316898	Complete white stage	6.580
	SRR8316899	Complete white stage	71.910
	SRR8316903	Complete white stage	13.417
	SRR8316902	Silver flowering stage	4.122
	SRR8316904	Silver flowering stage	6.293
	SRR8316905	Silver flowering stage	1.831
	SRR8316906	Gold flowering stage	4.870
	SRR8316907	Gold flowering stage	2.127
	SRR8316908	Gold flowering stage	8.095
SRP132670	SRR6706286	Control	106.352
	SRR6706287	Light intensity 50%	106.036
	SRR6706288	Light intensity 20%	115.008
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.154
	CNS0095593	Slightly white alabastrum(diploid) 2	10.077
	CNS0095594	Slightly white alabastrum(diploid) 3	16.281
	CNS0095595	Whole white alabastrum(diploid) 2	17.160
	CNS0095596	Whole white alabastrum(diploid) 3	21.467
	CNS0095597	Whole white alabastrum(diploid) 4	21.925
	CNS0095598	Silvery flower (diploied) 1	22.102
	CNS0095599	Silvery flower (diploied) 2	7.640
	CNS0095600	Silvery flower (diploied) 3	10.944
	CNS0095601	Golden flower (diploid) 1	4.908
	CNS0095602	Golden flower (diploid) 2	6.730
	CNS0095603	Golden flower (diploid) 3	6.923
	CNS0095604	Slightly white alabastrum(tetraploid) 1	39.804
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.020
	CNS0095606	Slightly white alabastrum(tetraploid) 3	90.910
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.340
	CNS0095608	Whole white alabastrum(tetraploid) 2	33.452
	CNS0095609	Whole white alabastrum(tetraploid) 3	79.495
	CNS0095610	Silvery flower (tetraploid) 1	32.517
	CNS0095611	Silvery flower (tetraploid) 2	20.921
	CNS0095612	Silvery flower (tetraploid) 3	16.209
	CNS0095613	Golden flower (tetraploid) 1	4.920
	CNS0095614	Golden flower (tetraploid) 2	18.723
	CNS0095615	Golden flower (tetraploid) 3	4.777
CRA001975	CRR073297	Stem 1	64.039
	CRR073298	Stem 2	71.884
	CRR073299	Stem 3	63.405
	CRR073300	Leaf 1	102.079
	CRR073301	Leaf 2	106.673
	CRR073302	Leaf 3	85.962
	CRR073303	Juvenile bud 1	113.033
	CRR073304	Juvenile bud 2	102.122
	CRR073305	Juvenile bud 3	113.405
	CRR073306	Third green 1	18.044
	CRR073307	Third green 2	9.373
	CRR073308	Third green 3	21.346
	CRR073309	Second white 1	3.463
	CRR073310	Second white 2	1.680
	CRR073311	Second white 3	2.764
	CRR073312	Silver flowering 1	1.427
	CRR073313	Silver flowering 2	4.176
	CRR073314	Silver flowering 3	0.546
	CRR073315	Gold flowering 1	117.946
	CRR073316	Gold flowering 2	95.968
	CRR073317	Gold flowering 3	133.320
	CRR073318	Tawny withering 1	2.083
	CRR073319	Tawny withering 2	2.266
	CRR073320	Tawny withering 3	0.884