Gene detail

Detail information of GWHGAAZE014823

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011097214.1	6.8193E-175	PREDICTED: G-box-binding factor 1-like isoform X1 [Sesamum indicum]
Swissprot	tr\|P42774\|GBF1_ARATH	2E-115	G-box-binding factor 1
trEMBL	tr\|A9PIG9\|A9PIG9_POPTR	1E-166	Uncharacterized protein {ECO:0000313\|EMBL:EEE90655.2}
TAIR10	AT4G36730.1	7E-77	G-box binding factor 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	19721079	19725973	+
GWHAAZE00000004	mRNA	19721079	19725973	+
GWHAAZE00000004	exon	19721079	19721141	+
GWHAAZE00000004	exon	19721264	19721311	+
GWHAAZE00000004	exon	19721421	19721507	+
GWHAAZE00000004	exon	19721626	19721715	+
GWHAAZE00000004	exon	19721976	19722133	+
GWHAAZE00000004	exon	19722261	19722318	+
GWHAAZE00000004	exon	19722731	19722779	+
GWHAAZE00000004	exon	19722862	19723070	+
GWHAAZE00000004	exon	19723564	19723641	+
GWHAAZE00000004	exon	19724258	19724383	+
GWHAAZE00000004	exon	19725872	19725973	+
GWHAAZE00000004	CDS	19721079	19721141	+
GWHAAZE00000004	CDS	19721264	19721311	+
GWHAAZE00000004	CDS	19721421	19721507	+
GWHAAZE00000004	CDS	19721626	19721715	+
GWHAAZE00000004	CDS	19721976	19722133	+
GWHAAZE00000004	CDS	19722261	19722318	+
GWHAAZE00000004	CDS	19722731	19722779	+
GWHAAZE00000004	CDS	19722862	19723070	+
GWHAAZE00000004	CDS	19723564	19723641	+
GWHAAZE00000004	CDS	19724258	19724383	+
GWHAAZE00000004	CDS	19725872	19725973	+

Transcript Sequence
>GWHTAAZE014837 ATGGGGGCTGGGGAAGAGAGCACACCTCCTATTAAGCAGTCCAAACCAACTTCTTCGGCTCAGGAAACACCAACTACACCATCATATCCTGATTGGTCAACCTCTATGCAGGCTTATTATGGTGGTGGAGCCGCTCCCCCATTTTTTGCCTCATCTGTTGCTTCTCCTACTCCTCATCCCTATATGTGGGGAGGCCAGCATCCTTTGATGCCACCCTATGGGACCCCTGTTCCATATCCAGCTTTATATCCTCCGGCTGGAGTTTATGCCCATCCTAGTATGGCCACGAATCCAAGCATAGCACCGACAAACTTAGAACCAGAGGGAAAGGCAGTTGAGGGGAAGGACCGGACTCCAAACAAAAAATCCAAGGGTATTTCAGGAAGCAAGGCTGGAGAGAGTGGGAAGGCAGCTTCGAGTTCAGGAAATGATGGTGCTACACAAAGCGCTGAAAGTGGAAGTGATGGTTCATCAGATGCAAGTGATGAGAATACTAACCAAAATGAATTTGCTGCAAGTAAGAAAGGAAGCTTTCACCAGATGCTTGCAGATGGAGCAAATGCACAGAATAACACTGCTGGATCTAATATTCAGACATTAGTGCCAGGGAATCCTGTAGGCTCTGTGCCTGCAACTAATCTGAATATTGGGATGGACTTGTGGAATGCATCATCCCCTGCTGGCACCAGAGCTATGAAAATGCGACCAAATCATTCACAATCAGTTTCTCCGGTGGCAATGATGCCAGATCAATGGGGCCAAGATGAACGCGAAATAAAAAAACAGAAGAGGAAGCAATCTAATCGAGAGTCAGCTAGGAGATCAAGATTACGCAAGCAGGCCGAGTGTGAGGAATTGCAGGCAAGGGTAGAAACATTAAGCAATGACAATCGTTCACTCAGAGATGAGCTACAGAGGCTTTCCGAGGAATGCAAAAAGCTCACATCAGAAAATAGTTCTATAAAGGAAGAGTTAACTAGGTTGTTTGGACCAGACGAAGTATCGAAACTCGATAACAGTAACATTACTCCGCATCTTCATTCTCGCGGCGATGAAGGTAACAGTTGA

Network for GWHGAAZE014823

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07777.12	MFMR	1	94	3.70E-30
PF00170.22	bZIP_1	256	318	2.80E-20

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.287
	SRR3591706	second leaf	12.981
	SRR3591707	mature leaf	19.527
	SRR3591708	Shoot apex	19.760
	SRR3591709	Stem	31.065
	SRR3591710	White floral bud	20.506
	SRR3591711	White flower	19.652
	SRR3591712	Green floral bud	9.986
	SRR3591713	Yellow flower	20.493
SRP173429	SRR8316895	Juvenile bud stage	13.177
	SRR8316896	Juvenile bud stage	14.680
	SRR8316897	Juvenile bud stage	7.526
	SRR8316894	Third green stage	5.297
	SRR8316900	Third green stage	16.693
	SRR8316901	Third green stage	14.827
	SRR8316898	Complete white stage	8.531
	SRR8316899	Complete white stage	30.930
	SRR8316903	Complete white stage	14.434
	SRR8316902	Silver flowering stage	7.829
	SRR8316904	Silver flowering stage	11.580
	SRR8316905	Silver flowering stage	4.320
	SRR8316906	Gold flowering stage	11.041
	SRR8316907	Gold flowering stage	11.949
	SRR8316908	Gold flowering stage	9.726
SRP132670	SRR6706286	Control	17.891
	SRR6706287	Light intensity 50%	15.052
	SRR6706288	Light intensity 20%	14.120
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.050
	CNS0095593	Slightly white alabastrum(diploid) 2	10.026
	CNS0095594	Slightly white alabastrum(diploid) 3	12.452
	CNS0095595	Whole white alabastrum(diploid) 2	7.954
	CNS0095596	Whole white alabastrum(diploid) 3	8.617
	CNS0095597	Whole white alabastrum(diploid) 4	8.208
	CNS0095598	Silvery flower (diploied) 1	24.634
	CNS0095599	Silvery flower (diploied) 2	21.318
	CNS0095600	Silvery flower (diploied) 3	19.657
	CNS0095601	Golden flower (diploid) 1	20.821
	CNS0095602	Golden flower (diploid) 2	25.878
	CNS0095603	Golden flower (diploid) 3	23.220
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.451
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.178
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.299
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.774
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.612
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.453
	CNS0095610	Silvery flower (tetraploid) 1	20.640
	CNS0095611	Silvery flower (tetraploid) 2	26.916
	CNS0095612	Silvery flower (tetraploid) 3	10.215
	CNS0095613	Golden flower (tetraploid) 1	16.112
	CNS0095614	Golden flower (tetraploid) 2	22.544
	CNS0095615	Golden flower (tetraploid) 3	21.368
CRA001975	CRR073297	Stem 1	15.985
	CRR073298	Stem 2	12.760
	CRR073299	Stem 3	11.518
	CRR073300	Leaf 1	15.285
	CRR073301	Leaf 2	14.786
	CRR073302	Leaf 3	11.119
	CRR073303	Juvenile bud 1	11.019
	CRR073304	Juvenile bud 2	6.793
	CRR073305	Juvenile bud 3	11.249
	CRR073306	Third green 1	2.216
	CRR073307	Third green 2	4.269
	CRR073308	Third green 3	4.206
	CRR073309	Second white 1	0.258
	CRR073310	Second white 2	1.559
	CRR073311	Second white 3	0.643
	CRR073312	Silver flowering 1	0.137
	CRR073313	Silver flowering 2	0.050
	CRR073314	Silver flowering 3	0.940
	CRR073315	Gold flowering 1	7.459
	CRR073316	Gold flowering 2	9.730
	CRR073317	Gold flowering 3	5.710
	CRR073318	Tawny withering 1	16.388
	CRR073319	Tawny withering 2	16.134
	CRR073320	Tawny withering 3	18.841