Gene detail

Detail information of GWHGAAZE014836

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006340603.1	5.3884E-174	PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa-like isoform X2 [Solanum tuberosum]
Swissprot	tr\|Q42404\|RU17_ARATH	1E-139	U1 small nuclear ribonucleoprotein 70 kDa
trEMBL	tr\|M1B730\|M1B730_SOLTU	2E-174	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400038557}
TAIR10	AT3G50670.1	6E-76	U1 small nuclear ribonucleoprotein-70K

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	19976877	19985394	+
GWHAAZE00000004	mRNA	19976877	19985394	+
GWHAAZE00000004	exon	19976877	19976987	+
GWHAAZE00000004	exon	19978475	19978589	+
GWHAAZE00000004	exon	19978684	19978763	+
GWHAAZE00000004	exon	19980022	19980097	+
GWHAAZE00000004	exon	19980196	19980260	+
GWHAAZE00000004	exon	19980350	19980464	+
GWHAAZE00000004	exon	19981810	19981847	+
GWHAAZE00000004	exon	19981949	19982012	+
GWHAAZE00000004	exon	19982840	19982990	+
GWHAAZE00000004	exon	19984074	19984139	+
GWHAAZE00000004	exon	19984752	19985394	+
GWHAAZE00000004	CDS	19976877	19976987	+
GWHAAZE00000004	CDS	19978475	19978589	+
GWHAAZE00000004	CDS	19978684	19978763	+
GWHAAZE00000004	CDS	19980022	19980097	+
GWHAAZE00000004	CDS	19980196	19980260	+
GWHAAZE00000004	CDS	19980350	19980464	+
GWHAAZE00000004	CDS	19981810	19981847	+
GWHAAZE00000004	CDS	19981949	19982012	+
GWHAAZE00000004	CDS	19982840	19982990	+
GWHAAZE00000004	CDS	19984074	19984139	+
GWHAAZE00000004	CDS	19984752	19985394	+

Transcript Sequence
>GWHTAAZE014850 ATGGGGGATTACACCGATGCCTTCAATCGCAACAACGCCGCCAACAATAACGCCGCCGTACAGGCCCGCACCAAGGCTCAGAACCGCGCCAATGTTATGCAGCTCAAGCTGATTGGACAAAGTCATCCTACTGGTTTGACAAACAATCTTTTGAAGCTATTCGAGGCCCGGCCTCCTTTGGAGTACAAACCACCTCCAGAAAAGAGAAAATGCCCACCATATACTGGTATGGCGCAATTTGTTACTAACTTTGTGGAGCCGAGTGATCCTGAATATGCTCCACCTGTTCAGAAGGGTGAAACTCCCACACAAAGGAGGGCTCGGGTCCACATGTTACGGCTAGAGGAGGGTGCAAAAAAGGCTGCCGAGGAGCTTGAAAAATATGATCCGAATAAAGACCCAAATGTTTCTGGTGATCCATACAAGACATTGTTTGTAGCTAGGCTAAACTATGAGACAACTGAGAGCAGAATCAAAAGGGAGTTTGAGACATACGGGCCTATCAAGCGGGTAGGTATTATAGAGTATCCCAGAGTGGGGCTCAGTTATTGCCTTTGGTTCGGCTATCGAAAACGTTTCAGCAGTTCAGAAGATTTCCTGTTTCTCTGCAACTCTAGCACCGGTGGTGATGCATCTCGCCTGGGAAAGCTTTATGATTTAAAAGGTGCTTATAAACAAGCTGATGGGAGGAAGCTAGATAATAGAAGGGTGCTTGTGGATGTTGAACGTGGTAGAACAGTTCCAAACTGGCGACCTCGCAGACTTGGGGGTGGACTTGGAACCACTAGGGTTGGAGGTGAAGAAGTTAATCAGAGAGAACAACATCAGTCAGGAGGACCACCTCAGTCTGAGGAGCCAAGAGTACGGGAGGATCGAGACCGGGATAGGGAAAAGTCTCGTGAAAGGGTAAAGGACCGAGAAAAGGAGCGTGAAAAGTCTCATGAACGCTCTCATGATAGATCAAGGGACCGTGACCGAGACGATAAACACCACAGAGACCGTGAGCGAACCAGGGACAAGGACCGAGACAAGGAGAGAGACAGGGGTCGTGACCGGGACCGAGCCCGGGACAGGGGTCGAGACCGTGGTCATGAGCGAGACCGTGACCGTGGTGACCGCCATCGGGAGAAGGATAGAGAGAGGGACCATGAAGCTGTTGACCACGACCGCGGTCGGTCCCGTGATAAGGACTATGACTTTGACTCAAAGCACGACCGAGACCGGCATGGTGAAAGAGAGAAGAAATATGATGATCAGGTTGAGCCGGAGGATGATCCCAGTTGGTATGAACAACCGGAGCACGGGTCCCGAGAACATGGGGCTTATGATTACCGTGAACGTCGAGGGAAGTATGATGATTTGGATGTGCATGATCAGTATGAACACCCCTCCGATCGCGACCACGATCGGTATGATCAAATGGAGGAGGATGATTACGGTTACGATCGAGCAATGACTGAGGTTCAAGAGAAGGACAGTGATTACCGGCGCTCAAATAGGTCACACTCTCGTGGTTACGAGTAG

Network for GWHGAAZE014836

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0040
CFinderModule0245

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12220.9	U1snRNP70_N	45	133	1.40E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11093	SNRP70	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	110.118
	SRR3591706	second leaf	61.774
	SRR3591707	mature leaf	75.701
	SRR3591708	Shoot apex	121.253
	SRR3591709	Stem	137.554
	SRR3591710	White floral bud	89.644
	SRR3591711	White flower	95.228
	SRR3591712	Green floral bud	94.857
	SRR3591713	Yellow flower	75.417
SRP173429	SRR8316895	Juvenile bud stage	143.127
	SRR8316896	Juvenile bud stage	209.717
	SRR8316897	Juvenile bud stage	86.985
	SRR8316894	Third green stage	80.316
	SRR8316900	Third green stage	186.965
	SRR8316901	Third green stage	216.538
	SRR8316898	Complete white stage	59.088
	SRR8316899	Complete white stage	236.914
	SRR8316903	Complete white stage	142.489
	SRR8316902	Silver flowering stage	73.663
	SRR8316904	Silver flowering stage	86.545
	SRR8316905	Silver flowering stage	46.114
	SRR8316906	Gold flowering stage	129.962
	SRR8316907	Gold flowering stage	148.279
	SRR8316908	Gold flowering stage	129.911
SRP132670	SRR6706286	Control	246.070
	SRR6706287	Light intensity 50%	255.666
	SRR6706288	Light intensity 20%	251.913
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	154.111
	CNS0095593	Slightly white alabastrum(diploid) 2	167.751
	CNS0095594	Slightly white alabastrum(diploid) 3	123.896
	CNS0095595	Whole white alabastrum(diploid) 2	114.899
	CNS0095596	Whole white alabastrum(diploid) 3	106.272
	CNS0095597	Whole white alabastrum(diploid) 4	101.738
	CNS0095598	Silvery flower (diploied) 1	148.685
	CNS0095599	Silvery flower (diploied) 2	106.112
	CNS0095600	Silvery flower (diploied) 3	72.223
	CNS0095601	Golden flower (diploid) 1	119.571
	CNS0095602	Golden flower (diploid) 2	81.583
	CNS0095603	Golden flower (diploid) 3	79.769
	CNS0095604	Slightly white alabastrum(tetraploid) 1	146.250
	CNS0095605	Slightly white alabastrum(tetraploid) 2	113.923
	CNS0095606	Slightly white alabastrum(tetraploid) 3	207.800
	CNS0095607	Whole white alabastrum(tetraploid) 1	80.477
	CNS0095608	Whole white alabastrum(tetraploid) 2	66.257
	CNS0095609	Whole white alabastrum(tetraploid) 3	143.592
	CNS0095610	Silvery flower (tetraploid) 1	156.475
	CNS0095611	Silvery flower (tetraploid) 2	101.514
	CNS0095612	Silvery flower (tetraploid) 3	90.574
	CNS0095613	Golden flower (tetraploid) 1	76.510
	CNS0095614	Golden flower (tetraploid) 2	107.281
	CNS0095615	Golden flower (tetraploid) 3	71.702
CRA001975	CRR073297	Stem 1	272.523
	CRR073298	Stem 2	243.915
	CRR073299	Stem 3	97.903
	CRR073300	Leaf 1	349.875
	CRR073301	Leaf 2	330.805
	CRR073302	Leaf 3	103.132
	CRR073303	Juvenile bud 1	116.468
	CRR073304	Juvenile bud 2	69.563
	CRR073305	Juvenile bud 3	122.794
	CRR073306	Third green 1	27.203
	CRR073307	Third green 2	24.280
	CRR073308	Third green 3	29.309
	CRR073309	Second white 1	26.371
	CRR073310	Second white 2	25.964
	CRR073311	Second white 3	23.394
	CRR073312	Silver flowering 1	25.262
	CRR073313	Silver flowering 2	21.450
	CRR073314	Silver flowering 3	18.664
	CRR073315	Gold flowering 1	36.862
	CRR073316	Gold flowering 2	62.987
	CRR073317	Gold flowering 3	33.638
	CRR073318	Tawny withering 1	115.267
	CRR073319	Tawny withering 2	114.971
	CRR073320	Tawny withering 3	105.117