Gene detail

Detail information of GWHGAAZE014839

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009794665.1	PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial isoform X2 [Nicotiana sylvestris]
Swissprot	tr\|O82663\|SDHA1_ARATH	Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial (Precursor)
trEMBL	tr\|A0A068U1I2\|A0A068U1I2_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313\|EMBL:CDP02029.1}
TAIR10	AT5G66760.1	succinate dehydrogenase 1-1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	20069885	20079969	+
GWHAAZE00000004	mRNA	20069885	20079969	+
GWHAAZE00000004	exon	20069885	20069986	+
GWHAAZE00000004	exon	20070552	20070719	+
GWHAAZE00000004	exon	20072476	20072563	+
GWHAAZE00000004	exon	20072873	20073019	+
GWHAAZE00000004	exon	20073101	20073241	+
GWHAAZE00000004	exon	20073670	20073755	+
GWHAAZE00000004	exon	20073849	20073941	+
GWHAAZE00000004	exon	20074024	20074087	+
GWHAAZE00000004	exon	20074317	20074460	+
GWHAAZE00000004	exon	20076623	20076810	+
GWHAAZE00000004	exon	20077366	20077540	+
GWHAAZE00000004	exon	20077630	20077800	+
GWHAAZE00000004	exon	20078446	20078515	+
GWHAAZE00000004	exon	20078603	20078723	+
GWHAAZE00000004	exon	20078839	20078876	+
GWHAAZE00000004	exon	20079622	20079969	+
GWHAAZE00000004	CDS	20069885	20069986	+
GWHAAZE00000004	CDS	20070552	20070719	+
GWHAAZE00000004	CDS	20072476	20072563	+
GWHAAZE00000004	CDS	20072873	20073019	+
GWHAAZE00000004	CDS	20073101	20073241	+
GWHAAZE00000004	CDS	20073670	20073755	+
GWHAAZE00000004	CDS	20073849	20073941	+
GWHAAZE00000004	CDS	20074024	20074087	+
GWHAAZE00000004	CDS	20074317	20074460	+
GWHAAZE00000004	CDS	20076623	20076810	+
GWHAAZE00000004	CDS	20077366	20077540	+
GWHAAZE00000004	CDS	20077630	20077800	+
GWHAAZE00000004	CDS	20078446	20078515	+
GWHAAZE00000004	CDS	20078603	20078723	+
GWHAAZE00000004	CDS	20078839	20078876	+
GWHAAZE00000004	CDS	20079622	20079724	+
GWHAAZE00000004	three_prime_UTR	20079725	20079969	+

Transcript Sequence
>GWHTAAZE014853 ATGTGGCGGTGCGTTTCTCGAGGCCTTCGCATTCCGTCGAGGAGATCCGCCTCCGGCGATTCCCTCAAACCTCACTTCCACAGATTTTTCTCTTCCGAATCTAGTGTGGAAGGCTCATCATATACTGTAGTAGATCATACATACGATGCAGTGGTGGTAGGTGCCGGTGGAGCCGGGCTCAGGGCGGCAATAGGGCTGTCTGAGCACGGATTCAACACAGCTTGCATTACAAAGCTCTTTCCAACTCGTTCACATACGGTTGCAGCTCAGGGTGGTATAAATGCTGCATTAGGAAACATGAGTGAAGATGATTGGAGGTGGCACATGTATGATACAGTTAAGGGAAGTGATTGGTTAGGTGACCAGGATGCTATTCAATATATGTGTAGAGAAGCACCAAAAGCAGTTATAGAGCTTGAGAATTATGGGTTACCATTTTCCCGAACTGAAGATGGAAAAATATATCAACGTGCATTTGGTGGTCAAAGCTTAGACTTTGGAAAAGGCGGGCAAGCATATCGCTGTGCATGTGCCGCTGATCGAACAGGACATGCTTTGTTGCATACTCTCTATGGCCAAGCCATGAGACATAATACTCAATTTTTTGTTGAGTATTTTGCTTTGGATCTACTTATGGGTAGCGACGGTAGCTGCCAAGGTGTAATAGCACTAAATATGGAGGATGGAACACTACATCGGTTCCATTCTGCTTCAACAATTCTAGCCACAGGGGGTTATGGCAGAGCATACTTTTCTGCAACCTCTGCTCATACTTGTACTGGGGATGGTAATGCTATGGTTGCACGTGCTGGGCTCCCCCTTGAGGATCTTGAGTTTGTACAGTTTCATCCAACTGGTATTTATGGTGCGGGGTGCCTTATTACTGAAGGATCTCGTGGTGAAGGTGGTATTCTTAGGAACAGTGAAGGTGAGCGATTTATGGAACGTTATGCCCCCACAGCCAAGGATCTTGCCTCAAGAGATGTTGTCTCAAGATCTATGACAATGGAAATTCGGGAAGGTCGCGGTGTAGGACCCTTGAAGGACCACATATATCTCCATTTGAATCATTTACCACCAGAGGTCCTTAAGGAGAGGCTGCCTGGTATCTCTGAAACTGCTGCCATTTTTGCTGGTGTTGATGTTACAAAGGAGCCAATCCCTGTTTTACCCACAGTTCATTACAACATGGGCGGAATTCCCACGAATTACCATGGGGAGGTGGTTAATAAAAAAGGTGATGATCCAGATGCAATAGTTCCTGGGCTGATGGCCGCTGGGGAGGCAGCTTGTGCATCTGTCCACGGTGCCAATCGTCTTGGTGCAAATTCTCTTCTTGACATTGTTGTTTTTGGTCGAGCTTGTGCAAATAGGGTTGCAGAGATCCAGAAACCTGGGGAGAAGCAAAAACCTTTGGAAAAAGATGCTGGAGAGAAGACAATTGCATGGTTGGACAAGCTACGGAATTCAAATGGTTCACTTCCAACATCAAAAATCCGTTTGAATATGCAACGAATAATGCAAAATAATGCTGCTGTGTTCCGTACACAGGAGACGTTAGAGGAAGGTTGTAAATTGATTGATAAAGCATGGGAGAGCTTCCATGATGTTCAGTTGAAGGACAGATCCTTGATATGGAACTCGGACTTGATAGAGACCGTCGAGTTAGAAAACCTTTTGATCAATGCATGCATCACCATGCATTCGGCTGAAGCTAGGAAAGAGAGCAGAGGAGCTCATGCCCGTGAAGATTTTACAACAAGAGACGATGAGAAGTGGATGAAGCATACATTGGGATACTGGGAGAATGAGAAGGTTCGGCTAGACTACAGGCCAGTTCACATGAACACGTTAGATGATGAGATTGAGACATTCCCACCAAAGGCTCGTGTGTACTGATGATATATCCGCACGTAAGGTTTGTGGTTCTAGGGAACGTTTAATTTTACTTTCCTAAAGGTTGCAATAAAATCATTTGGACTGCAATTTTGCAATTGTTTTTCCAATCCCTACAAATAAATTAAATGGATTCATCATTAGTGCCAATGTTTGATGAAACCTGAACTTTTGTACAAGCCTGGAATGGTAATGTAGCTTTCTGTATCTTTTGTTGATGAGATTGATACCTTCCTTCCATACTTTCG

Network for GWHGAAZE014839

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00890.25	FAD_binding_2	49	445	1.90E-123
PF02910.21	Succ_DH_flav_C	500	632	2.50E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00234	SDHA, SDH1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Citrate cycle	map00020
		Oxidative phosphorylation	map00190
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0022900	biological_process	electron transport chain
GO:0006099	biological_process	tricarboxylic acid cycle
GO:0016491	molecular_function	oxidoreductase activity
GO:0016627	molecular_function	oxidoreductase activity, acting on the CH-CH group of donors
GO:0050660	molecular_function	flavin adenine dinucleotide binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	156.052
	SRR3591706	second leaf	67.527
	SRR3591707	mature leaf	46.190
	SRR3591708	Shoot apex	93.828
	SRR3591709	Stem	103.169
	SRR3591710	White floral bud	203.533
	SRR3591711	White flower	273.076
	SRR3591712	Green floral bud	191.646
	SRR3591713	Yellow flower	195.419
SRP173429	SRR8316895	Juvenile bud stage	112.332
	SRR8316896	Juvenile bud stage	196.898
	SRR8316897	Juvenile bud stage	97.549
	SRR8316894	Third green stage	86.781
	SRR8316900	Third green stage	348.079
	SRR8316901	Third green stage	317.918
	SRR8316898	Complete white stage	224.838
	SRR8316899	Complete white stage	225.231
	SRR8316903	Complete white stage	295.242
	SRR8316902	Silver flowering stage	427.506
	SRR8316904	Silver flowering stage	494.165
	SRR8316905	Silver flowering stage	266.784
	SRR8316906	Gold flowering stage	1197.819
	SRR8316907	Gold flowering stage	1040.481
	SRR8316908	Gold flowering stage	1140.484
SRP132670	SRR6706286	Control	211.699
	SRR6706287	Light intensity 50%	220.077
	SRR6706288	Light intensity 20%	224.364
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	143.939
	CNS0095593	Slightly white alabastrum(diploid) 2	146.913
	CNS0095594	Slightly white alabastrum(diploid) 3	152.692
	CNS0095595	Whole white alabastrum(diploid) 2	161.185
	CNS0095596	Whole white alabastrum(diploid) 3	183.998
	CNS0095597	Whole white alabastrum(diploid) 4	155.577
	CNS0095598	Silvery flower (diploied) 1	107.271
	CNS0095599	Silvery flower (diploied) 2	132.264
	CNS0095600	Silvery flower (diploied) 3	447.107
	CNS0095601	Golden flower (diploid) 1	139.495
	CNS0095602	Golden flower (diploid) 2	288.543
	CNS0095603	Golden flower (diploid) 3	276.481
	CNS0095604	Slightly white alabastrum(tetraploid) 1	204.573
	CNS0095605	Slightly white alabastrum(tetraploid) 2	177.223
	CNS0095606	Slightly white alabastrum(tetraploid) 3	216.658
	CNS0095607	Whole white alabastrum(tetraploid) 1	192.575
	CNS0095608	Whole white alabastrum(tetraploid) 2	196.530
	CNS0095609	Whole white alabastrum(tetraploid) 3	285.434
	CNS0095610	Silvery flower (tetraploid) 1	673.476
	CNS0095611	Silvery flower (tetraploid) 2	620.884
	CNS0095612	Silvery flower (tetraploid) 3	818.331
	CNS0095613	Golden flower (tetraploid) 1	339.606
	CNS0095614	Golden flower (tetraploid) 2	570.496
	CNS0095615	Golden flower (tetraploid) 3	206.010
CRA001975	CRR073297	Stem 1	181.904
	CRR073298	Stem 2	186.155
	CRR073299	Stem 3	189.158
	CRR073300	Leaf 1	304.442
	CRR073301	Leaf 2	289.832
	CRR073302	Leaf 3	288.063
	CRR073303	Juvenile bud 1	367.803
	CRR073304	Juvenile bud 2	394.402
	CRR073305	Juvenile bud 3	373.995
	CRR073306	Third green 1	971.753
	CRR073307	Third green 2	664.935
	CRR073308	Third green 3	733.923
	CRR073309	Second white 1	1429.526
	CRR073310	Second white 2	1166.494
	CRR073311	Second white 3	989.793
	CRR073312	Silver flowering 1	531.868
	CRR073313	Silver flowering 2	652.625
	CRR073314	Silver flowering 3	533.751
	CRR073315	Gold flowering 1	167.264
	CRR073316	Gold flowering 2	168.302
	CRR073317	Gold flowering 3	123.160
	CRR073318	Tawny withering 1	150.451
	CRR073319	Tawny withering 2	162.401
	CRR073320	Tawny withering 3	115.925