Detail information of GWHGAAZE014845


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010649143.10PREDICTED: nucleolar protein 6 isoform X2 [Vitis vinifera]
trEMBLtr|F6GWW2|F6GWW2_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB44448.1}
TAIR10AT1G63810.10Without detailed annotation

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2016155820172496-
GWHAAZE00000004mRNA2016155820172496-
GWHAAZE00000004exon2017224720172496-
GWHAAZE00000004exon2017193720172098-
GWHAAZE00000004exon2017075820170923-
GWHAAZE00000004exon2017051020170626-
GWHAAZE00000004exon2017028120170414-
GWHAAZE00000004exon2017002220170181-
GWHAAZE00000004exon2016892820168995-
GWHAAZE00000004exon2016872720168825-
GWHAAZE00000004exon2016846920168584-
GWHAAZE00000004exon2016797320168052-
GWHAAZE00000004exon2016766120167826-
GWHAAZE00000004exon2016678620166960-
GWHAAZE00000004exon2016658620166696-
GWHAAZE00000004exon2016642920166504-
GWHAAZE00000004exon2016618720166330-
GWHAAZE00000004exon2016593620166049-
GWHAAZE00000004exon2016539620165517-
GWHAAZE00000004exon2016522920165311-
GWHAAZE00000004exon2016501920165143-
GWHAAZE00000004exon2016479620164916-
GWHAAZE00000004exon2016455820164695-
GWHAAZE00000004exon2016395620164052-
GWHAAZE00000004exon2016323520163327-
GWHAAZE00000004exon2016303420163139-
GWHAAZE00000004exon2016204220162184-
GWHAAZE00000004exon2016185120161937-
GWHAAZE00000004exon2016155820161686-
GWHAAZE00000004five_prime_UTR2017239120172496-
GWHAAZE00000004CDS2017224720172390-
GWHAAZE00000004CDS2017193720172098-
GWHAAZE00000004CDS2017075820170923-
GWHAAZE00000004CDS2017051020170626-
GWHAAZE00000004CDS2017028120170414-
GWHAAZE00000004CDS2017002220170181-
GWHAAZE00000004CDS2016892820168995-
GWHAAZE00000004CDS2016872720168825-
GWHAAZE00000004CDS2016846920168584-
GWHAAZE00000004CDS2016797320168052-
GWHAAZE00000004CDS2016766120167826-
GWHAAZE00000004CDS2016678620166960-
GWHAAZE00000004CDS2016658620166696-
GWHAAZE00000004CDS2016642920166504-
GWHAAZE00000004CDS2016618720166330-
GWHAAZE00000004CDS2016593620166049-
GWHAAZE00000004CDS2016539620165517-
GWHAAZE00000004CDS2016522920165311-
GWHAAZE00000004CDS2016501920165143-
GWHAAZE00000004CDS2016479620164916-
GWHAAZE00000004CDS2016455820164695-
GWHAAZE00000004CDS2016395620164052-
GWHAAZE00000004CDS2016323520163327-
GWHAAZE00000004CDS2016303420163139-
GWHAAZE00000004CDS2016204220162184-
GWHAAZE00000004CDS2016185120161937-
GWHAAZE00000004CDS2016155820161686-
Transcript Sequence

Network for GWHGAAZE014845

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03813.15Nrap942264.30E-35
PF17403.3Nrap_D22343771.20E-31
PF17404.3Nrap_D34916181.30E-25
PF17405.3Nrap_D46428163.40E-43
PF17406.3Nrap_D58209083.00E-29
PF17407.3Nrap_D694410521.70E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14544UTP22, NOL6 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.222
SRR3591706second leaf3.065
SRR3591707mature leaf4.457
SRR3591708Shoot apex14.186
SRR3591709Stem7.111
SRR3591710White floral bud9.917
SRR3591711White flower15.737
SRR3591712Green floral bud11.920
SRR3591713Yellow flower14.881
SRP173429 SRR8316895Juvenile bud stage 8.052
SRR8316896Juvenile bud stage 11.479
SRR8316897Juvenile bud stage 5.357
SRR8316894Third green stage 4.640
SRR8316900Third green stage 10.115
SRR8316901Third green stage 8.074
SRR8316898Complete white stage 1.200
SRR8316899Complete white stage 6.831
SRR8316903Complete white stage 2.484
SRR8316902Silver flowering stage2.929
SRR8316904Silver flowering stage3.844
SRR8316905Silver flowering stage1.456
SRR8316906Gold flowering stage 5.352
SRR8316907Gold flowering stage 6.071
SRR8316908Gold flowering stage 6.448
SRP132670SRR6706286Control6.485
SRR6706287Light intensity 50%6.882
SRR6706288Light intensity 20%7.178
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.448
CNS0095593Slightly white alabastrum(diploid) 25.378
CNS0095594Slightly white alabastrum(diploid) 36.155
CNS0095595Whole white alabastrum(diploid) 24.838
CNS0095596Whole white alabastrum(diploid) 34.742
CNS0095597Whole white alabastrum(diploid) 44.322
CNS0095598Silvery flower (diploied) 17.433
CNS0095599Silvery flower (diploied) 25.662
CNS0095600Silvery flower (diploied) 34.737
CNS0095601Golden flower (diploid) 14.954
CNS0095602Golden flower (diploid) 24.178
CNS0095603Golden flower (diploid) 33.979
CNS0095604Slightly white alabastrum(tetraploid) 16.440
CNS0095605Slightly white alabastrum(tetraploid) 25.007
CNS0095606Slightly white alabastrum(tetraploid) 313.084
CNS0095607Whole white alabastrum(tetraploid) 13.938
CNS0095608Whole white alabastrum(tetraploid) 22.919
CNS0095609Whole white alabastrum(tetraploid) 38.820
CNS0095610Silvery flower (tetraploid) 19.214
CNS0095611Silvery flower (tetraploid) 27.499
CNS0095612Silvery flower (tetraploid) 36.845
CNS0095613Golden flower (tetraploid) 14.252
CNS0095614Golden flower (tetraploid) 26.816
CNS0095615Golden flower (tetraploid) 34.854
CRA001975CRR073297Stem 18.173
CRR073298Stem 27.263
CRR073299Stem 34.795
CRR073300Leaf 16.525
CRR073301Leaf 26.342
CRR073302Leaf 33.489
CRR073303Juvenile bud 13.923
CRR073304Juvenile bud 21.199
CRR073305Juvenile bud 33.816
CRR073306Third green 10.221
CRR073307Third green 20.361
CRR073308Third green 30.520
CRR073309Second white 10.704
CRR073310Second white 21.224
CRR073311Second white 31.510
CRR073312Silver flowering 11.291
CRR073313Silver flowering 21.296
CRR073314Silver flowering 30.979
CRR073315Gold flowering 11.420
CRR073316Gold flowering 22.765
CRR073317Gold flowering 31.271
CRR073318Tawny withering 14.493
CRR073319Tawny withering 24.917
CRR073320Tawny withering 35.066