Gene detail

Detail information of GWHGAAZE014853

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHN36105.1	4.6122E-177	Tubby-like F-box protein 5 [Glycine soja]
Swissprot	tr\|Q6Z2G9\|TLP5_ORYSJ	2E-140	Tubby-like F-box protein 5
trEMBL	tr\|K4BB27\|K4BB27_SOLLC	1E-174	Tubby-like F-box protein {ECO:0000256\|RuleBase:RU361125}
TAIR10	AT2G18280.2	9E-101	tubby like protein 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	20337301	20339491	-
GWHAAZE00000004	mRNA	20337301	20339491	-
GWHAAZE00000004	exon	20337301	20337973	-
GWHAAZE00000004	exon	20338469	20338518	-
GWHAAZE00000004	exon	20339144	20339491	-
GWHAAZE00000004	CDS	20339144	20339491	-
GWHAAZE00000004	CDS	20338469	20338518	-
GWHAAZE00000004	CDS	20337301	20337973	-

Transcript Sequence
>GWHTAAZE014867 ATGGCACTCAAAAGCATCGTAAGAGAGTTGATGGAGATAAAAGATGGGATTGGGAGCAAGTCAAGGAGAGGCGTGGAAGGGAAGCATTGGCCCAACCGCACTCGGTCCCATATTGCCCCCGATGTTGCGCCTCTTGAACCCATTGAACAAGGGCGGTGGGCAAACTTACCACCAGAATTGCTTTTGGATATAATCAGCAGGGTTGAAGACAGTGAATTATCTTGGCCTGCAAGGTCGGCTGTCGTCTTTTGTGCAGCGGTTTGTAAGTCATGGAGGGATGTTACCAAGGAAATTGTCAAGACTCCAGAGGAATGTGGGAGGCTCACCTTCCCCATTTCGTTAAAGCAGAAACACGAAGGGATGCATTGGTGCAATGGAAATATATTACCCATTGGGAGGTCTAATTTTCTTGGGACCAAGTTCTCCATGTACGACAGTCAACCTCCAAACGACATCATAGTTCAACCAAATGGCCGTTCAAGTCGAAGGTTCCACGCTAGGCAAGTATCTCCACGAGTACCTGCATGTAACTATCGAGTAGGAACCATTACATATGAGCTCAATGTCCTTCGCACAAGAGGCCCTAGGAGAATGAACTGTGTGATGCAATCTATACCCATCTCTTCAATTCAAGAAGGGGGCACCGCCCCTACACCAACCTTGTTCCCACTACCCTTCAACGAGAAACTTCCTCCTTCGTCGGCCTCGAGAGGCAAGGAATTAGCCATAAATTTAAGCTTACCAACCAACGTCAATTCATCTGCGCCAGTCCCACCTTCGGCGGACCCCTTGGTTTTGAAAAACAAGGCGCCTAGGTGGCACGAGCAGTTACAGTGCTGGTGCCTTAATTTTAAAGGCCGGGTAACCGTAGCGTCTGTGAAGAATTTCCAGCTTGTAGCGGCTGTTGATCCTTCTCACAATGTGTCTGCTGAAGAGCAAGATAAAGCGATTCTACAGTTTGGGAAGATCGGAAAAGATATATTCACCATGGATTATCGTTACCCGCTATCTGCCTTCCAAGCCTTTGCGATCTGCTTGAGCAGCTTCGACACAAAACCCGCATGTGAGTGA

Network for GWHGAAZE014853

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	53	103	3.70E-08
PF01167.19	Tub	132	351	1.50E-76

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TUB
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.641
	SRR3591706	second leaf	11.982
	SRR3591707	mature leaf	3.379
	SRR3591708	Shoot apex	36.895
	SRR3591709	Stem	24.875
	SRR3591710	White floral bud	98.983
	SRR3591711	White flower	15.727
	SRR3591712	Green floral bud	92.578
	SRR3591713	Yellow flower	10.381
SRP173429	SRR8316895	Juvenile bud stage	18.681
	SRR8316896	Juvenile bud stage	25.638
	SRR8316897	Juvenile bud stage	15.394
	SRR8316894	Third green stage	14.488
	SRR8316900	Third green stage	70.677
	SRR8316901	Third green stage	65.797
	SRR8316898	Complete white stage	14.283
	SRR8316899	Complete white stage	41.410
	SRR8316903	Complete white stage	13.303
	SRR8316902	Silver flowering stage	9.412
	SRR8316904	Silver flowering stage	9.849
	SRR8316905	Silver flowering stage	4.419
	SRR8316906	Gold flowering stage	10.735
	SRR8316907	Gold flowering stage	12.932
	SRR8316908	Gold flowering stage	12.818
SRP132670	SRR6706286	Control	55.944
	SRR6706287	Light intensity 50%	56.366
	SRR6706288	Light intensity 20%	57.128
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	51.451
	CNS0095593	Slightly white alabastrum(diploid) 2	50.872
	CNS0095594	Slightly white alabastrum(diploid) 3	48.046
	CNS0095595	Whole white alabastrum(diploid) 2	117.298
	CNS0095596	Whole white alabastrum(diploid) 3	135.132
	CNS0095597	Whole white alabastrum(diploid) 4	169.368
	CNS0095598	Silvery flower (diploied) 1	24.988
	CNS0095599	Silvery flower (diploied) 2	31.726
	CNS0095600	Silvery flower (diploied) 3	33.925
	CNS0095601	Golden flower (diploid) 1	22.323
	CNS0095602	Golden flower (diploid) 2	29.047
	CNS0095603	Golden flower (diploid) 3	29.974
	CNS0095604	Slightly white alabastrum(tetraploid) 1	100.761
	CNS0095605	Slightly white alabastrum(tetraploid) 2	98.580
	CNS0095606	Slightly white alabastrum(tetraploid) 3	43.041
	CNS0095607	Whole white alabastrum(tetraploid) 1	183.706
	CNS0095608	Whole white alabastrum(tetraploid) 2	212.616
	CNS0095609	Whole white alabastrum(tetraploid) 3	103.350
	CNS0095610	Silvery flower (tetraploid) 1	25.014
	CNS0095611	Silvery flower (tetraploid) 2	38.491
	CNS0095612	Silvery flower (tetraploid) 3	39.626
	CNS0095613	Golden flower (tetraploid) 1	16.744
	CNS0095614	Golden flower (tetraploid) 2	22.920
	CNS0095615	Golden flower (tetraploid) 3	25.211
CRA001975	CRR073297	Stem 1	58.411
	CRR073298	Stem 2	61.448
	CRR073299	Stem 3	54.919
	CRR073300	Leaf 1	118.719
	CRR073301	Leaf 2	97.430
	CRR073302	Leaf 3	81.188
	CRR073303	Juvenile bud 1	96.365
	CRR073304	Juvenile bud 2	73.016
	CRR073305	Juvenile bud 3	61.131
	CRR073306	Third green 1	34.478
	CRR073307	Third green 2	38.664
	CRR073308	Third green 3	39.699
	CRR073309	Second white 1	10.717
	CRR073310	Second white 2	14.520
	CRR073311	Second white 3	12.077
	CRR073312	Silver flowering 1	26.298
	CRR073313	Silver flowering 2	25.793
	CRR073314	Silver flowering 3	19.712
	CRR073315	Gold flowering 1	27.374
	CRR073316	Gold flowering 2	20.020
	CRR073317	Gold flowering 3	15.345
	CRR073318	Tawny withering 1	75.688
	CRR073319	Tawny withering 2	68.246
	CRR073320	Tawny withering 3	69.613