Detail information of GWHGAAZE014892


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHG27008.15.3471E-109putative ubiquitin-conjugating enzyme E2 18 -like protein [Gossypium arboreum]
Swissprottr|Q9FWT2|UBC16_ARATH2E-98Probable ubiquitin-conjugating enzyme E2 16
trEMBLtr|A6MUS6|A6MUS6_GOSHI2E-109Ubiquitin conjugating enzyme {ECO:0000313|EMBL:ABR14728.1}
TAIR10AT1G75440.11E-73ubiquitin-conjugating enzyme 16

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2099802721001558-
GWHAAZE00000004mRNA2099802721001558-
GWHAAZE00000004exon2100141221001558-
GWHAAZE00000004exon2100109821001201-
GWHAAZE00000004exon2100073121000833-
GWHAAZE00000004exon2100053421000597-
GWHAAZE00000004exon2099912620999214-
GWHAAZE00000004exon2099802720998385-
GWHAAZE00000004five_prime_UTR2100144221001558-
GWHAAZE00000004CDS2100141221001441-
GWHAAZE00000004CDS2100109821001201-
GWHAAZE00000004CDS2100073121000833-
GWHAAZE00000004CDS2100053421000597-
GWHAAZE00000004CDS2099912620999214-
GWHAAZE00000004CDS2099829020998385-
GWHAAZE00000004three_prime_UTR2099802720998289-
Transcript Sequence

Network for GWHGAAZE014892

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.27UQ_con191541.70E-37
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K10688UBE2W, UBC16 Ubiquitin mediated proteolysis map04120

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf36.978
SRR3591706second leaf36.353
SRR3591707mature leaf45.354
SRR3591708Shoot apex40.036
SRR3591709Stem53.452
SRR3591710White floral bud32.626
SRR3591711White flower62.906
SRR3591712Green floral bud34.834
SRR3591713Yellow flower78.678
SRP173429 SRR8316895Juvenile bud stage 18.929
SRR8316896Juvenile bud stage 30.333
SRR8316897Juvenile bud stage 12.619
SRR8316894Third green stage 10.650
SRR8316900Third green stage 32.089
SRR8316901Third green stage 35.850
SRR8316898Complete white stage 27.368
SRR8316899Complete white stage 61.675
SRR8316903Complete white stage 28.424
SRR8316902Silver flowering stage33.396
SRR8316904Silver flowering stage38.931
SRR8316905Silver flowering stage19.312
SRR8316906Gold flowering stage 66.762
SRR8316907Gold flowering stage 66.729
SRR8316908Gold flowering stage 61.199
SRP132670SRR6706286Control32.354
SRR6706287Light intensity 50%31.238
SRR6706288Light intensity 20%36.563
CNP0000432CNS0095592Slightly white alabastrum(diploid) 134.852
CNS0095593Slightly white alabastrum(diploid) 233.031
CNS0095594Slightly white alabastrum(diploid) 331.601
CNS0095595Whole white alabastrum(diploid) 229.062
CNS0095596Whole white alabastrum(diploid) 327.775
CNS0095597Whole white alabastrum(diploid) 427.470
CNS0095598Silvery flower (diploied) 139.892
CNS0095599Silvery flower (diploied) 244.440
CNS0095600Silvery flower (diploied) 355.199
CNS0095601Golden flower (diploid) 139.208
CNS0095602Golden flower (diploid) 257.078
CNS0095603Golden flower (diploid) 353.212
CNS0095604Slightly white alabastrum(tetraploid) 128.833
CNS0095605Slightly white alabastrum(tetraploid) 230.002
CNS0095606Slightly white alabastrum(tetraploid) 336.009
CNS0095607Whole white alabastrum(tetraploid) 126.422
CNS0095608Whole white alabastrum(tetraploid) 221.006
CNS0095609Whole white alabastrum(tetraploid) 323.383
CNS0095610Silvery flower (tetraploid) 160.398
CNS0095611Silvery flower (tetraploid) 258.920
CNS0095612Silvery flower (tetraploid) 343.322
CNS0095613Golden flower (tetraploid) 151.794
CNS0095614Golden flower (tetraploid) 250.517
CNS0095615Golden flower (tetraploid) 354.321
CRA001975CRR073297Stem 131.837
CRR073298Stem 227.669
CRR073299Stem 329.041
CRR073300Leaf 124.333
CRR073301Leaf 228.633
CRR073302Leaf 324.917
CRR073303Juvenile bud 130.619
CRR073304Juvenile bud 230.250
CRR073305Juvenile bud 332.773
CRR073306Third green 128.907
CRR073307Third green 225.570
CRR073308Third green 324.234
CRR073309Second white 136.185
CRR073310Second white 233.119
CRR073311Second white 324.749
CRR073312Silver flowering 120.494
CRR073313Silver flowering 224.334
CRR073314Silver flowering 318.033
CRR073315Gold flowering 136.472
CRR073316Gold flowering 234.242
CRR073317Gold flowering 332.357
CRR073318Tawny withering 134.635
CRR073319Tawny withering 241.423
CRR073320Tawny withering 334.696