Detail information of GWHGAAZE014904


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP01945.10unnamed protein product [Coffea canephora]
Swissprottr|Q70E96|AL3F1_ARATH0Aldehyde dehydrogenase family 3 member F1
trEMBLtr|A0A068U080|A0A068U080_COFCA0Aldehyde dehydrogenase {ECO:0000256|PIRNR:PIRNR036492}
TAIR10AT4G36250.10aldehyde dehydrogenase 3F1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2128047121287042-
GWHAAZE00000004mRNA2128047121287042-
GWHAAZE00000004exon2128047121280719-
GWHAAZE00000004exon2128119121281340-
GWHAAZE00000004exon2128142821281518-
GWHAAZE00000004exon2128162221281794-
GWHAAZE00000004exon2128210821282212-
GWHAAZE00000004exon2128279321282917-
GWHAAZE00000004exon2128302821283234-
GWHAAZE00000004exon2128342621283522-
GWHAAZE00000004exon2128422121284289-
GWHAAZE00000004exon2128684521287042-
GWHAAZE00000004CDS2128684521287042-
GWHAAZE00000004CDS2128422121284289-
GWHAAZE00000004CDS2128342621283522-
GWHAAZE00000004CDS2128302821283234-
GWHAAZE00000004CDS2128279321282917-
GWHAAZE00000004CDS2128210821282212-
GWHAAZE00000004CDS2128162221281794-
GWHAAZE00000004CDS2128142821281518-
GWHAAZE00000004CDS2128119121281340-
GWHAAZE00000004CDS2128047121280719-
Transcript Sequence

Network for GWHGAAZE014904

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00171.23Aldedh74373.50E-75
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00128ALDH Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Glycolysis / Gluconeogenesismap00010
Ascorbate and aldarate metabolismmap00053
Pyruvate metabolismmap00620
Fatty acid degradationmap00071
Glycerolipid metabolismmap00561
Valine, leucine and isoleucine degradationmap00280
Lysine degradationmap00310
Arginine and proline metabolismmap00330
Histidine metabolismmap00340
Tryptophan metabolismmap00380
beta-Alanine metabolismmap00410
Insect hormone biosynthesismap00981
Limonene and pinene degradationmap00903
Chloroalkane and chloroalkene degradationmap00625

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0006081biological_processcellular aldehyde metabolic process
GO:0016491molecular_functionoxidoreductase activity
GO:0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.819
SRR3591706second leaf19.024
SRR3591707mature leaf16.200
SRR3591708Shoot apex51.263
SRR3591709Stem7.654
SRR3591710White floral bud79.110
SRR3591711White flower96.128
SRR3591712Green floral bud52.586
SRR3591713Yellow flower174.321
SRP173429 SRR8316895Juvenile bud stage 125.897
SRR8316896Juvenile bud stage 185.636
SRR8316897Juvenile bud stage 49.454
SRR8316894Third green stage 43.573
SRR8316900Third green stage 54.067
SRR8316901Third green stage 53.149
SRR8316898Complete white stage 60.493
SRR8316899Complete white stage 73.131
SRR8316903Complete white stage 87.598
SRR8316902Silver flowering stage49.081
SRR8316904Silver flowering stage65.951
SRR8316905Silver flowering stage28.338
SRR8316906Gold flowering stage 144.720
SRR8316907Gold flowering stage 161.647
SRR8316908Gold flowering stage 141.656
SRP132670SRR6706286Control73.154
SRR6706287Light intensity 50%72.649
SRR6706288Light intensity 20%73.439
CNP0000432CNS0095592Slightly white alabastrum(diploid) 141.365
CNS0095593Slightly white alabastrum(diploid) 231.248
CNS0095594Slightly white alabastrum(diploid) 366.440
CNS0095595Whole white alabastrum(diploid) 230.419
CNS0095596Whole white alabastrum(diploid) 324.324
CNS0095597Whole white alabastrum(diploid) 434.169
CNS0095598Silvery flower (diploied) 166.377
CNS0095599Silvery flower (diploied) 265.518
CNS0095600Silvery flower (diploied) 3156.740
CNS0095601Golden flower (diploid) 170.456
CNS0095602Golden flower (diploid) 2145.594
CNS0095603Golden flower (diploid) 3143.326
CNS0095604Slightly white alabastrum(tetraploid) 120.299
CNS0095605Slightly white alabastrum(tetraploid) 218.477
CNS0095606Slightly white alabastrum(tetraploid) 333.665
CNS0095607Whole white alabastrum(tetraploid) 115.692
CNS0095608Whole white alabastrum(tetraploid) 211.234
CNS0095609Whole white alabastrum(tetraploid) 347.734
CNS0095610Silvery flower (tetraploid) 1130.486
CNS0095611Silvery flower (tetraploid) 2118.631
CNS0095612Silvery flower (tetraploid) 3162.991
CNS0095613Golden flower (tetraploid) 1165.647
CNS0095614Golden flower (tetraploid) 2153.278
CNS0095615Golden flower (tetraploid) 3153.161
CRA001975CRR073297Stem 1194.494
CRR073298Stem 2149.353
CRR073299Stem 3209.416
CRR073300Leaf 146.369
CRR073301Leaf 246.794
CRR073302Leaf 355.293
CRR073303Juvenile bud 133.961
CRR073304Juvenile bud 251.428
CRR073305Juvenile bud 338.729
CRR073306Third green 135.566
CRR073307Third green 233.160
CRR073308Third green 330.579
CRR073309Second white 181.388
CRR073310Second white 2108.821
CRR073311Second white 3120.668
CRR073312Silver flowering 1103.730
CRR073313Silver flowering 283.710
CRR073314Silver flowering 3102.052
CRR073315Gold flowering 17.820
CRR073316Gold flowering 27.822
CRR073317Gold flowering 34.625
CRR073318Tawny withering 17.507
CRR073319Tawny withering 213.456
CRR073320Tawny withering 36.789