Detail information of GWHGAAZE014914


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002533810.10nuclear receptor binding set domain containing protein 1, nsd, putative [Ricinus communis]
Swissprottr|Q9SD34|C3H44_ARATH4E-157Zinc finger CCCH domain-containing protein 44
trEMBLtr|B9T6E1|B9T6E1_RICCO0Nuclear receptor binding set domain containing protein 1, nsd, putative {ECO:0000313|EMBL:EEF28579.1}
TAIR10AT3G51120.12E-141DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2149825321507255-
GWHAAZE00000004mRNA2149825321507255-
GWHAAZE00000004exon2150688221507255-
GWHAAZE00000004exon2150662621506744-
GWHAAZE00000004exon2150437821504595-
GWHAAZE00000004exon2150308721504002-
GWHAAZE00000004exon2150252121502648-
GWHAAZE00000004exon2150034621500475-
GWHAAZE00000004exon2150011321500220-
GWHAAZE00000004exon2149825321499616-
GWHAAZE00000004CDS2150688221507255-
GWHAAZE00000004CDS2150662621506744-
GWHAAZE00000004CDS2150437821504595-
GWHAAZE00000004CDS2150308721504002-
GWHAAZE00000004CDS2150252121502648-
GWHAAZE00000004CDS2150034621500475-
GWHAAZE00000004CDS2150011321500220-
GWHAAZE00000004CDS2149825321499616-
Transcript Sequence

Network for GWHGAAZE014914

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02201.19SWIB3654236.40E-14
PF03126.19Plus-34925852.10E-17
PF02213.17GYF7407761.80E-12
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySWI/SNF-BAF60b

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding
GO:0003677molecular_functionDNA binding
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.333
SRR3591706second leaf9.090
SRR3591707mature leaf15.471
SRR3591708Shoot apex12.898
SRR3591709Stem18.299
SRR3591710White floral bud23.788
SRR3591711White flower39.418
SRR3591712Green floral bud14.805
SRR3591713Yellow flower33.490
SRP173429 SRR8316895Juvenile bud stage 9.389
SRR8316896Juvenile bud stage 11.312
SRR8316897Juvenile bud stage 7.751
SRR8316894Third green stage 4.536
SRR8316900Third green stage 10.134
SRR8316901Third green stage 11.692
SRR8316898Complete white stage 7.695
SRR8316899Complete white stage 19.317
SRR8316903Complete white stage 13.917
SRR8316902Silver flowering stage12.098
SRR8316904Silver flowering stage17.462
SRR8316905Silver flowering stage8.626
SRR8316906Gold flowering stage 28.036
SRR8316907Gold flowering stage 24.027
SRR8316908Gold flowering stage 29.969
SRP132670SRR6706286Control9.834
SRR6706287Light intensity 50%10.928
SRR6706288Light intensity 20%10.800
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.859
CNS0095593Slightly white alabastrum(diploid) 210.622
CNS0095594Slightly white alabastrum(diploid) 311.804
CNS0095595Whole white alabastrum(diploid) 28.394
CNS0095596Whole white alabastrum(diploid) 34.414
CNS0095597Whole white alabastrum(diploid) 46.871
CNS0095598Silvery flower (diploied) 118.494
CNS0095599Silvery flower (diploied) 214.581
CNS0095600Silvery flower (diploied) 331.942
CNS0095601Golden flower (diploid) 118.115
CNS0095602Golden flower (diploid) 232.194
CNS0095603Golden flower (diploid) 333.236
CNS0095604Slightly white alabastrum(tetraploid) 18.615
CNS0095605Slightly white alabastrum(tetraploid) 27.641
CNS0095606Slightly white alabastrum(tetraploid) 316.607
CNS0095607Whole white alabastrum(tetraploid) 16.323
CNS0095608Whole white alabastrum(tetraploid) 24.856
CNS0095609Whole white alabastrum(tetraploid) 313.243
CNS0095610Silvery flower (tetraploid) 132.783
CNS0095611Silvery flower (tetraploid) 228.600
CNS0095612Silvery flower (tetraploid) 326.550
CNS0095613Golden flower (tetraploid) 118.480
CNS0095614Golden flower (tetraploid) 228.992
CNS0095615Golden flower (tetraploid) 335.376
CRA001975CRR073297Stem 113.558
CRR073298Stem 211.795
CRR073299Stem 38.776
CRR073300Leaf 19.603
CRR073301Leaf 29.544
CRR073302Leaf 36.093
CRR073303Juvenile bud 17.870
CRR073304Juvenile bud 26.720
CRR073305Juvenile bud 310.224
CRR073306Third green 18.805
CRR073307Third green 25.897
CRR073308Third green 38.487
CRR073309Second white 17.251
CRR073310Second white 211.647
CRR073311Second white 310.179
CRR073312Silver flowering 111.867
CRR073313Silver flowering 210.779
CRR073314Silver flowering 311.115
CRR073315Gold flowering 17.169
CRR073316Gold flowering 210.260
CRR073317Gold flowering 35.301
CRR073318Tawny withering 112.021
CRR073319Tawny withering 218.953
CRR073320Tawny withering 39.330