Gene detail

Detail information of GWHGAAZE014916

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP01931.1	1.0737E-122	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8VYZ3\|PME53_ARATH	2E-97	Probable pectinesterase 53 (Precursor)
trEMBL	tr\|A0A068U088\|A0A068U088_COFCA	4E-123	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT5G19730.1	5E-80	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	21550491	21552601	-
GWHAAZE00000004	mRNA	21550491	21552601	-
GWHAAZE00000004	exon	21550491	21550644	-
GWHAAZE00000004	exon	21550900	21551106	-
GWHAAZE00000004	exon	21551180	21551340	-
GWHAAZE00000004	exon	21552253	21552340	-
GWHAAZE00000004	exon	21552420	21552601	-
GWHAAZE00000004	CDS	21552420	21552601	-
GWHAAZE00000004	CDS	21552253	21552340	-
GWHAAZE00000004	CDS	21551180	21551340	-
GWHAAZE00000004	CDS	21550900	21551106	-
GWHAAZE00000004	CDS	21550491	21550644	-

Transcript Sequence
>GWHTAAZE014930 ATGGGTTCTCTAAACCACTCTCTCTACCAAAAAGCAAAGAACAAGTTCAAACCTTACTTAATCATCAAAGTCCATAAAACCCCAAAATTAGGAAATTTTACTACCATACGAAATGTTGTAAAATCGCTTCCACTGGTTAATCTCTGCCGTGTTGTTATCTCTATCAGCGCAGGGACTTACAGGGAAAAAGTCAAAATTCCGATGAACGTGGCTTCTTTTAGCATAGAAGGAGCCGGTGCTGACAAGACGATCATCGAATGGGATGACACAAACGCAGCGCCATGTCCACCATCAGGAGTACTAGGCAAACAAGCAGTGGCTCTTCGGATCTCAGCCGACACAGCGGTTTTCATAGGCTGCAACTTCATTGGATCACAAGACACTTTACGATCACACCGGCGGGCACTATTTCAAGGATTGCTACATCCAAGCTACGGTGCCCTAACGACCCAACAGAGGCATATCTTAAATGAGGATAGTGGGTTCTCCTTTGTTCATTGCAAGGTCACGGGCTCCGGTGCCCTTTACTTGGGCAGGGCTTGGGGCACCTTCTCTAGGGTGGTGTTTGCTTACACTTACATGGACAGAATCATCACACCTAGAGGATGGTACAACTGGGGAGATAAGCGTAGAGAAATGACCGTATTTTATGGACAATTCAAGTGTTGGGATCCACAGGCAGATTTTGAAGGGCGGGTTTCATGGTCTAGGGAACTCACTCCACAAGAGGCTGAACCTTTTATCTCGCTTAACTTCATCCACGGATACGAATGGCTCACAAACTTGTCATAA

Network for GWHGAAZE014916

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0172

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01095.20	Pectinesterase	31	86	1.90E-07
PF01095.20	Pectinesterase	99	134	2.20E-06
PF01095.20	Pectinesterase	147	255	5.00E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0030599	molecular_function	pectinesterase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.197
	SRR3591706	second leaf	0.069
	SRR3591707	mature leaf	0.240
	SRR3591708	Shoot apex	0.911
	SRR3591709	Stem	1.699
	SRR3591710	White floral bud	2.273
	SRR3591711	White flower	2.782
	SRR3591712	Green floral bud	0.885
	SRR3591713	Yellow flower	3.360
SRP173429	SRR8316895	Juvenile bud stage	0.196
	SRR8316896	Juvenile bud stage	0.208
	SRR8316897	Juvenile bud stage	0.395
	SRR8316894	Third green stage	0.058
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.203
	SRR8316898	Complete white stage	0.034
	SRR8316899	Complete white stage	0.058
	SRR8316903	Complete white stage	0.322
	SRR8316902	Silver flowering stage	0.675
	SRR8316904	Silver flowering stage	0.103
	SRR8316905	Silver flowering stage	0.090
	SRR8316906	Gold flowering stage	0.478
	SRR8316907	Gold flowering stage	0.575
	SRR8316908	Gold flowering stage	0.557
SRP132670	SRR6706286	Control	0.091
	SRR6706287	Light intensity 50%	0.103
	SRR6706288	Light intensity 20%	0.057
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.191
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.228
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.113
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.062
	CNS0095599	Silvery flower (diploied) 2	0.061
	CNS0095600	Silvery flower (diploied) 3	0.365
	CNS0095601	Golden flower (diploid) 1	0.738
	CNS0095602	Golden flower (diploid) 2	0.268
	CNS0095603	Golden flower (diploid) 3	0.149
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.522
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.486
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.330
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.560
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.172
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.287
	CNS0095610	Silvery flower (tetraploid) 1	1.219
	CNS0095611	Silvery flower (tetraploid) 2	1.071
	CNS0095612	Silvery flower (tetraploid) 3	2.337
	CNS0095613	Golden flower (tetraploid) 1	1.535
	CNS0095614	Golden flower (tetraploid) 2	1.466
	CNS0095615	Golden flower (tetraploid) 3	1.897
CRA001975	CRR073297	Stem 1	0.479
	CRR073298	Stem 2	0.066
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.002
	CRR073301	Leaf 2	0.341
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.054
	CRR073307	Third green 2	0.050
	CRR073308	Third green 3	0.172
	CRR073309	Second white 1	0.227
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.031
	CRR073319	Tawny withering 2	0.133
	CRR073320	Tawny withering 3	0.000