Gene detail

Detail information of GWHGAAZE014922

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010649056.1	1.3858E-173	PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9FWX2\|NAC7_ARATH	3E-97	NAC domain-containing protein 7
trEMBL	tr\|A0A061DLN4\|A0A061DLN4_THECC	7E-174	Vascular related NAC-domain protein 1 isoform 2 {ECO:0000313\|EMBL:EOX90893.1}
TAIR10	AT2G18060.1	2E-100	vascular related NAC-domain protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	21655071	21656957	+
GWHAAZE00000004	mRNA	21655071	21656957	+
GWHAAZE00000004	exon	21655071	21655242	+
GWHAAZE00000004	exon	21655591	21655902	+
GWHAAZE00000004	exon	21656056	21656114	+
GWHAAZE00000004	exon	21656367	21656957	+
GWHAAZE00000004	CDS	21655071	21655242	+
GWHAAZE00000004	CDS	21655591	21655902	+
GWHAAZE00000004	CDS	21656056	21656114	+
GWHAAZE00000004	CDS	21656367	21656957	+

Transcript Sequence
>GWHTAAZE014936 ATGATGGAGAGTAGTACCATGGAATCATGTGTTCCACCTGGCTTCCGGTTTCATCCAACCGACGAGGAGCTAGTAGGGTACTATCTAAGGAAGAAGATAGCTTCGCAAAGGATCGATCTTGATGTCATTAGAGACATTGATCTTTACAGAATTGAACCTTGGGATCTCATAGAGAGGTGTCGAATCGGATACGAAGAGCAAAAGGAGTGGTATTTCTTTAGCCACAAGGATAAGAAGTATCCAACCGGAACAAGGACTAATAGAGCAACAATGGCGGGGTTCTGGAAGGCTACTGGGAGAGACAAGACAGTGTACGATAAAACGAAGCTGATTGGGATGAGGAAAACCCTAGTTTTCTACAAAGGGAGGGCGCCAAATGGGCAGAAAACTGACTGGATCATGCATGAATACAGGCTCGAAACGGAAGAGAATGGTCCTCCTCAGGCAAGTTCCATTTTTGCTTCTTCTAAAGAGTACTCATGGGAAAGTGCCAAGAATTTCTTCATAAAACCTAAATTTTTGGTTTGCTTCCAAACAATGAAGGAAGAAGGTTGGGTGGTATGTCGGGCATTCAAGAAGCGAGCCACTGCCCAATCAAAGAACACGGAAGGGTGGGACCCTGCATACTTCTACGACGAGCCAAGTGGCGTCAGCTCAGTCATCGATCCACTCGATAATTACATGGCAACACATCAAACCAACTACATTGATTTACACCAAAGTTTCATGTGCAAGCAAGAAATAGAAGCCGATAATACAAATTTGGTCCAGTCCGACCAATTCGTGCAGCTTCCTCAGCTAGAGAGCCCCTCTCTTCCACTAATGAAGAGGCCAATGAGCTCGATATCGCTTGTTTCGGATAATAATGAGGAAGAAGAGAATAATGTCATTATTAGTAACAATAAAGTGACTACTGATTGGAGGGAACTTGACAAGTTTGTTGCTTCTCAATTTTGTCAAGAGGAGAGATATGGTGAATTGGAAGATGGAGGGTTGAGATTTATTAATGGAGGAACTAATGATGATAACAATGGAGGGATGGGATTGGTTTTAGAAGAAGGGGAGAGGTTAAATGGGTTGTTGAGTTCAAGGGCAGACTCTTGTGATATTGGAATTTGCATATTTGATAAATGA

Network for GWHGAAZE014922

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	12	139	1.70E-37

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.735
	SRR3591706	second leaf	6.667
	SRR3591707	mature leaf	0.120
	SRR3591708	Shoot apex	3.421
	SRR3591709	Stem	13.524
	SRR3591710	White floral bud	0.968
	SRR3591711	White flower	0.413
	SRR3591712	Green floral bud	1.342
	SRR3591713	Yellow flower	0.306
SRP173429	SRR8316895	Juvenile bud stage	1.411
	SRR8316896	Juvenile bud stage	2.458
	SRR8316897	Juvenile bud stage	1.254
	SRR8316894	Third green stage	0.545
	SRR8316900	Third green stage	1.243
	SRR8316901	Third green stage	1.208
	SRR8316898	Complete white stage	0.004
	SRR8316899	Complete white stage	0.162
	SRR8316903	Complete white stage	0.350
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.120
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.187
	SRR8316907	Gold flowering stage	0.067
	SRR8316908	Gold flowering stage	0.142
SRP132670	SRR6706286	Control	0.507
	SRR6706287	Light intensity 50%	0.624
	SRR6706288	Light intensity 20%	0.561
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.348
	CNS0095593	Slightly white alabastrum(diploid) 2	1.860
	CNS0095594	Slightly white alabastrum(diploid) 3	1.222
	CNS0095595	Whole white alabastrum(diploid) 2	0.234
	CNS0095596	Whole white alabastrum(diploid) 3	0.629
	CNS0095597	Whole white alabastrum(diploid) 4	0.142
	CNS0095598	Silvery flower (diploied) 1	0.021
	CNS0095599	Silvery flower (diploied) 2	0.659
	CNS0095600	Silvery flower (diploied) 3	0.105
	CNS0095601	Golden flower (diploid) 1	0.213
	CNS0095602	Golden flower (diploid) 2	0.138
	CNS0095603	Golden flower (diploid) 3	0.372
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.592
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.079
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.921
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.129
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.233
	CNS0095610	Silvery flower (tetraploid) 1	0.309
	CNS0095611	Silvery flower (tetraploid) 2	0.383
	CNS0095612	Silvery flower (tetraploid) 3	0.514
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.576
	CNS0095615	Golden flower (tetraploid) 3	0.090
CRA001975	CRR073297	Stem 1	1.742
	CRR073298	Stem 2	2.130
	CRR073299	Stem 3	5.729
	CRR073300	Leaf 1	0.656
	CRR073301	Leaf 2	1.579
	CRR073302	Leaf 3	0.931
	CRR073303	Juvenile bud 1	0.260
	CRR073304	Juvenile bud 2	0.462
	CRR073305	Juvenile bud 3	0.108
	CRR073306	Third green 1	0.365
	CRR073307	Third green 2	0.136
	CRR073308	Third green 3	0.181
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.064
	CRR073311	Second white 3	0.122
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.213
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.703
	CRR073316	Gold flowering 2	1.299
	CRR073317	Gold flowering 3	0.258
	CRR073318	Tawny withering 1	11.959
	CRR073319	Tawny withering 2	6.362
	CRR073320	Tawny withering 3	22.904