Gene detail

Detail information of GWHGAAZE014940

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002274366.2	0	PREDICTED: ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic [Vitis vinifera]
Swissprot	tr\|P41343\|FENR_MESCR	0	Ferredoxin--NADP reductase, chloroplastic (Precursor)
trEMBL	tr\|E0CQ75\|E0CQ75_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI19880.3}
TAIR10	AT1G20020.1	1E-161	ferredoxin-NADP(+)-oxidoreductase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	21998755	22001510	+
GWHAAZE00000004	mRNA	21998755	22001510	+
GWHAAZE00000004	exon	21998755	21999052	+
GWHAAZE00000004	exon	21999220	21999353	+
GWHAAZE00000004	exon	21999599	21999677	+
GWHAAZE00000004	exon	21999816	21999907	+
GWHAAZE00000004	exon	21999998	22000075	+
GWHAAZE00000004	exon	22000332	22000394	+
GWHAAZE00000004	exon	22000641	22000875	+
GWHAAZE00000004	exon	22001443	22001510	+
GWHAAZE00000004	CDS	21998755	21999052	+
GWHAAZE00000004	CDS	21999220	21999353	+
GWHAAZE00000004	CDS	21999599	21999677	+
GWHAAZE00000004	CDS	21999816	21999907	+
GWHAAZE00000004	CDS	21999998	22000075	+
GWHAAZE00000004	CDS	22000332	22000394	+
GWHAAZE00000004	CDS	22000641	22000875	+
GWHAAZE00000004	CDS	22001443	22001510	+

Transcript Sequence
>GWHTAAZE014954 ATGTGCTTCATAGACACTATTAGCATACTTTTTCACACGGGGTATTTGGCTGTGAAGGTCCCCTTGTACTACAGAAATGCCTCAGTTGGTGGGAAAATGGTCTCCATCAGAGCCCAGGTCACAACAGATTCTGTTCCTCCTACCAAGGTTGAAAAGGTCTCCAAGAAACAGGATGAAGGTGTAGTTGTTAACAAGTTCAAGCCCAAGAATCCTTACACTGGTAAGGTCCTTCTCAACTCCAAGATCACTGCTGATGATGCACCTGGAGAAACTTGGCACATGGTCTTCGCTACCGAGGGGGAAGTCCCTTACAGAGAAGGGCAATCTATTGGGATAATTCCAGAGGGTATTGACAAGAATGGGAAGCCTCACAAGCTGAGGTTGTACTCAATTGCTAGCAGTGCCCTCGGCGACTTTGGCGACTCCAAAACTGTTTCTTTGTGTGTGAAAAGGCTTGTGTACACTAATGACGCAGGGGAAATAGTTAAAGGAGTTTGCTCAAATTTCTTGTGTGACTTGAAGCCTGGGGCTGACGTGATTATAACCGGACCCGTAGGAAAAGAAATGCTTATGCCAAAGGACCCTAATGCAACAGTTATTATGCTTGCAACCGGAACTGGAATTGCACCTTTCCGCTCATTCTTATGGAAAATGTTCTTTGAGAAGTATGAAGACTATGAGTTCAATGGTTTGGCATGGCTCTTCTTGGGTGTTCCCACAAGTAGCTCACTGCTTTATCAAGAGGAGTTTGACAAGATGAAGGAGAAGAAGCCTGATAATTTCAGAGTTGACTATGCAGTGAGCAGAGAGCAAACCAATGAGAAGGGAGAAAAGATGTACATCCAAACCCGAATGGCTCAGTATGCAGAAGAGCTATGGGAGTTGCTTAAAAAGGACAACACGTACGTGTACATGTGTGGGCTTAAGGGAATGGAAAAGGGAATTGATGACATTATGGTGTCATTGGCTGCTAAAGATGATATTGATTGGATTGAATACAAAAGGAGCTTGAAGAAGGCACATCAATGGATGGTGGAAGTCTACTAA

Network for GWHGAAZE014940

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00175.22	NAD_binding_1	201	316	9.90E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02641	petH	Metabolic pathways	map01100
K02641	petH	Photosynthesis	map00195

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	128.100
	SRR3591706	second leaf	726.739
	SRR3591707	mature leaf	884.146
	SRR3591708	Shoot apex	243.458
	SRR3591709	Stem	110.152
	SRR3591710	White floral bud	21.719
	SRR3591711	White flower	25.983
	SRR3591712	Green floral bud	36.369
	SRR3591713	Yellow flower	7.987
SRP173429	SRR8316895	Juvenile bud stage	64.870
	SRR8316896	Juvenile bud stage	64.379
	SRR8316897	Juvenile bud stage	41.874
	SRR8316894	Third green stage	24.258
	SRR8316900	Third green stage	78.074
	SRR8316901	Third green stage	60.657
	SRR8316898	Complete white stage	14.713
	SRR8316899	Complete white stage	39.464
	SRR8316903	Complete white stage	19.404
	SRR8316902	Silver flowering stage	8.931
	SRR8316904	Silver flowering stage	14.444
	SRR8316905	Silver flowering stage	4.981
	SRR8316906	Gold flowering stage	16.626
	SRR8316907	Gold flowering stage	16.278
	SRR8316908	Gold flowering stage	14.619
SRP132670	SRR6706286	Control	46.038
	SRR6706287	Light intensity 50%	43.712
	SRR6706288	Light intensity 20%	49.739
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.289
	CNS0095593	Slightly white alabastrum(diploid) 2	33.088
	CNS0095594	Slightly white alabastrum(diploid) 3	30.063
	CNS0095595	Whole white alabastrum(diploid) 2	39.974
	CNS0095596	Whole white alabastrum(diploid) 3	36.156
	CNS0095597	Whole white alabastrum(diploid) 4	28.688
	CNS0095598	Silvery flower (diploied) 1	72.923
	CNS0095599	Silvery flower (diploied) 2	65.825
	CNS0095600	Silvery flower (diploied) 3	39.148
	CNS0095601	Golden flower (diploid) 1	57.504
	CNS0095602	Golden flower (diploid) 2	46.516
	CNS0095603	Golden flower (diploid) 3	45.313
	CNS0095604	Slightly white alabastrum(tetraploid) 1	50.599
	CNS0095605	Slightly white alabastrum(tetraploid) 2	51.788
	CNS0095606	Slightly white alabastrum(tetraploid) 3	75.108
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.173
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.640
	CNS0095609	Whole white alabastrum(tetraploid) 3	70.605
	CNS0095610	Silvery flower (tetraploid) 1	31.762
	CNS0095611	Silvery flower (tetraploid) 2	46.558
	CNS0095612	Silvery flower (tetraploid) 3	21.773
	CNS0095613	Golden flower (tetraploid) 1	14.327
	CNS0095614	Golden flower (tetraploid) 2	31.301
	CNS0095615	Golden flower (tetraploid) 3	5.698
CRA001975	CRR073297	Stem 1	105.928
	CRR073298	Stem 2	89.381
	CRR073299	Stem 3	111.059
	CRR073300	Leaf 1	17.305
	CRR073301	Leaf 2	26.770
	CRR073302	Leaf 3	24.830
	CRR073303	Juvenile bud 1	14.294
	CRR073304	Juvenile bud 2	8.181
	CRR073305	Juvenile bud 3	16.215
	CRR073306	Third green 1	2.697
	CRR073307	Third green 2	3.569
	CRR073308	Third green 3	6.764
	CRR073309	Second white 1	11.945
	CRR073310	Second white 2	5.337
	CRR073311	Second white 3	4.601
	CRR073312	Silver flowering 1	3.396
	CRR073313	Silver flowering 2	2.803
	CRR073314	Silver flowering 3	2.603
	CRR073315	Gold flowering 1	828.692
	CRR073316	Gold flowering 2	1090.361
	CRR073317	Gold flowering 3	757.405
	CRR073318	Tawny withering 1	65.304
	CRR073319	Tawny withering 2	52.522
	CRR073320	Tawny withering 3	57.975