Gene detail

Detail information of GWHGAAZE014950

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006340749.1	0	PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog isoform X1 [Solanum tuberosum]
Swissprot	tr\|P55034\|PSMD4_ARATH	3E-174	26S proteasome non-ATPase regulatory subunit 4 homolog
trEMBL	tr\|M0ZVS7\|M0ZVS7_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400009215}
TAIR10	AT4G38630.1	8E-118	regulatory particle non-ATPase 10

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	22164731	22170758	+
GWHAAZE00000004	mRNA	22164731	22170758	+
GWHAAZE00000004	exon	22164731	22164742	+
GWHAAZE00000004	exon	22164872	22164985	+
GWHAAZE00000004	exon	22165200	22165305	+
GWHAAZE00000004	exon	22165892	22166006	+
GWHAAZE00000004	exon	22166101	22166310	+
GWHAAZE00000004	exon	22166823	22167132	+
GWHAAZE00000004	exon	22168149	22168278	+
GWHAAZE00000004	exon	22169463	22169566	+
GWHAAZE00000004	exon	22169730	22169798	+
GWHAAZE00000004	exon	22170702	22170758	+
GWHAAZE00000004	CDS	22164731	22164742	+
GWHAAZE00000004	CDS	22164872	22164985	+
GWHAAZE00000004	CDS	22165200	22165305	+
GWHAAZE00000004	CDS	22165892	22166006	+
GWHAAZE00000004	CDS	22166101	22166310	+
GWHAAZE00000004	CDS	22166823	22167132	+
GWHAAZE00000004	CDS	22168149	22168278	+
GWHAAZE00000004	CDS	22169463	22169566	+
GWHAAZE00000004	CDS	22169730	22169798	+
GWHAAZE00000004	CDS	22170702	22170758	+

Transcript Sequence
>GWHTAAZE014964 ATGGTGCTCGAGGCGACAATGATCTGTGTGGATAATTCTGAATGGATGAGAAACGGAGATTACTCTCCGACTAGGTTTCAAGCTCAAGCCGACGCTGTTAATCTAATCTGCGGAGCCAAAACCCAGTCTAATCCGGAGAATACTGTGGGAGTGTTGACAATGGCGGGTAAAGGGGTTCGTGTTTTGGTGACTCCGACCAGCGATCTTGGCAAGATCCTAGCTTGCATGCACGGTTTAGAAATAGGTGGTGAGATGAACTTAGCAGCTGGAATCCAGGTAGCTCAGTTGGCTCTCAAGCATCGTCAAAACAAAAAGCAGCAACAAAGGATTATTGTATTTTCTGGAAGCCCGGTTAAATACGACAAGAAGGTATTGGAAATGATTGGAAGGAAGTTAAAAAAGAACAGTGTAGCTCTTGATGTCGTTAACTTTGGTGAGGAAGATGATGCAAAGACAGAGAAGCTTGAGGCCCTGGTTGCTGCAGTAAACAATAATGACAGCAGTCACATTGTTCATGTTCCTCCTGGTTCAAATGCTCTTTCTGATGTGCTTATAAGTACTCCTATCTTTACTGGTGATGGAGAGGGAGGAAGTGGTTTTGCAGCTGCTGCAGCAGCTGCTGCAGCTGGTGGGGTATCTGGTTATGATTTTGGTGTGGATCCGAACCTGGACCCTGAGCTGGCTCTTGCTCTCCGAGTTTCAATGGAAGAGGAGAGGGCCAGGCAAGAAGCAGCGGCTAAAAAGGCTGCAGATGAAGCCTCGAAACAGGATAAAGGAGAACAGCAAAGCACTTCACATGATGCAACTATGACTGAAAGCACTGGGGCTGCTGCTTCTGAAGCTGAAAATAAGACAACTGATCTAACGGATGATGAGAATGCCCTATTACAACAAGCCCTTGCAATGTCAATGGATGAGCCTGCTGCTGCTGCAAGTGTTGCTACACGAGACACAGATATGTCCGAGGCAGCTGCAGATGATCAAGACTTGGCACTTGCTCTTCAATTATCTGTGCAGGAGAGTGCAAAAGAACAATCAAGCGAGACAGATATGAGTAACTTGTTGGCAGACCAGTCATTTGTGTCATCTATCCTTGCTTCGCTCCCTGGAGTTGATCCTAATGATCCTTCAGTTAAAGATTTACTTGCATCCATGCAAAGCCAGTCTCAGACCGACGAGAAGAAGGACGAAGATAAGGATAAGGCTCCTAAGGAGGAGGACAAATGA

Network for GWHGAAZE014950

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0060

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13519.7	VWA_2	6	115	1.50E-27
PF02809.21	UIM	224	237	0.81
PF02809.21	UIM	291	306	0.021
PF02809.21	UIM	326	341	0.012

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03029	PSMD4, RPN10	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	116.081
	SRR3591706	second leaf	64.811
	SRR3591707	mature leaf	52.555
	SRR3591708	Shoot apex	90.641
	SRR3591709	Stem	119.457
	SRR3591710	White floral bud	140.322
	SRR3591711	White flower	139.975
	SRR3591712	Green floral bud	110.738
	SRR3591713	Yellow flower	135.216
SRP173429	SRR8316895	Juvenile bud stage	74.522
	SRR8316896	Juvenile bud stage	102.918
	SRR8316897	Juvenile bud stage	51.254
	SRR8316894	Third green stage	44.511
	SRR8316900	Third green stage	111.800
	SRR8316901	Third green stage	115.867
	SRR8316898	Complete white stage	56.468
	SRR8316899	Complete white stage	155.625
	SRR8316903	Complete white stage	96.348
	SRR8316902	Silver flowering stage	62.487
	SRR8316904	Silver flowering stage	71.546
	SRR8316905	Silver flowering stage	37.271
	SRR8316906	Gold flowering stage	128.795
	SRR8316907	Gold flowering stage	137.087
	SRR8316908	Gold flowering stage	137.024
SRP132670	SRR6706286	Control	125.791
	SRR6706287	Light intensity 50%	121.335
	SRR6706288	Light intensity 20%	136.099
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	85.471
	CNS0095593	Slightly white alabastrum(diploid) 2	89.832
	CNS0095594	Slightly white alabastrum(diploid) 3	74.983
	CNS0095595	Whole white alabastrum(diploid) 2	67.864
	CNS0095596	Whole white alabastrum(diploid) 3	64.063
	CNS0095597	Whole white alabastrum(diploid) 4	63.129
	CNS0095598	Silvery flower (diploied) 1	92.581
	CNS0095599	Silvery flower (diploied) 2	91.531
	CNS0095600	Silvery flower (diploied) 3	109.347
	CNS0095601	Golden flower (diploid) 1	87.543
	CNS0095602	Golden flower (diploid) 2	101.760
	CNS0095603	Golden flower (diploid) 3	101.171
	CNS0095604	Slightly white alabastrum(tetraploid) 1	84.824
	CNS0095605	Slightly white alabastrum(tetraploid) 2	68.933
	CNS0095606	Slightly white alabastrum(tetraploid) 3	119.754
	CNS0095607	Whole white alabastrum(tetraploid) 1	54.666
	CNS0095608	Whole white alabastrum(tetraploid) 2	46.275
	CNS0095609	Whole white alabastrum(tetraploid) 3	92.457
	CNS0095610	Silvery flower (tetraploid) 1	131.252
	CNS0095611	Silvery flower (tetraploid) 2	130.710
	CNS0095612	Silvery flower (tetraploid) 3	123.938
	CNS0095613	Golden flower (tetraploid) 1	91.543
	CNS0095614	Golden flower (tetraploid) 2	108.549
	CNS0095615	Golden flower (tetraploid) 3	120.953
CRA001975	CRR073297	Stem 1	142.977
	CRR073298	Stem 2	136.001
	CRR073299	Stem 3	160.881
	CRR073300	Leaf 1	161.852
	CRR073301	Leaf 2	158.917
	CRR073302	Leaf 3	164.066
	CRR073303	Juvenile bud 1	179.553
	CRR073304	Juvenile bud 2	194.249
	CRR073305	Juvenile bud 3	177.827
	CRR073306	Third green 1	115.703
	CRR073307	Third green 2	102.712
	CRR073308	Third green 3	103.093
	CRR073309	Second white 1	95.774
	CRR073310	Second white 2	107.826
	CRR073311	Second white 3	95.460
	CRR073312	Silver flowering 1	93.528
	CRR073313	Silver flowering 2	93.101
	CRR073314	Silver flowering 3	106.560
	CRR073315	Gold flowering 1	66.166
	CRR073316	Gold flowering 2	92.774
	CRR073317	Gold flowering 3	55.222
	CRR073318	Tawny withering 1	146.366
	CRR073319	Tawny withering 2	140.586
	CRR073320	Tawny withering 3	153.957