Gene detail

Detail information of GWHGAAZE014952

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010649003.1	PREDICTED: histidine kinase 1 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9SXL4\|AHK1_ARATH	Histidine kinase 1
trEMBL	tr\|F6GWL2\|F6GWL2_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44347.1}
TAIR10	AT2G17820.1	histidine kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	22189300	22198246	+
GWHAAZE00000004	mRNA	22189300	22198246	+
GWHAAZE00000004	exon	22189300	22189542	+
GWHAAZE00000004	exon	22189630	22189872	+
GWHAAZE00000004	exon	22189969	22190760	+
GWHAAZE00000004	exon	22191162	22191409	+
GWHAAZE00000004	exon	22191613	22191772	+
GWHAAZE00000004	exon	22193057	22193183	+
GWHAAZE00000004	exon	22193313	22193402	+
GWHAAZE00000004	exon	22193637	22193831	+
GWHAAZE00000004	exon	22194178	22194247	+
GWHAAZE00000004	exon	22194801	22194843	+
GWHAAZE00000004	exon	22195164	22195304	+
GWHAAZE00000004	exon	22196385	22197440	+
GWHAAZE00000004	exon	22198031	22198246	+
GWHAAZE00000004	CDS	22189300	22189542	+
GWHAAZE00000004	CDS	22189630	22189872	+
GWHAAZE00000004	CDS	22189969	22190760	+
GWHAAZE00000004	CDS	22191162	22191409	+
GWHAAZE00000004	CDS	22191613	22191772	+
GWHAAZE00000004	CDS	22193057	22193183	+
GWHAAZE00000004	CDS	22193313	22193402	+
GWHAAZE00000004	CDS	22193637	22193831	+
GWHAAZE00000004	CDS	22194178	22194247	+
GWHAAZE00000004	CDS	22194801	22194843	+
GWHAAZE00000004	CDS	22195164	22195304	+
GWHAAZE00000004	CDS	22196385	22197440	+
GWHAAZE00000004	CDS	22198031	22198246	+

Transcript Sequence
>GWHTAAZE014966 CAAATAGAACTACCTCTTATCAGCTTTGAATCTTCACCACCTCCAAACAAACCAATGGCTTCACTTCTAAAGAGGCTCTCCAAGAGAATTTCGGGTTTCGCAAATCCTCCGGAAAATAACCAGTCGCCACGCAGCTGTGAAAGAACCTTCCACAGGGATGTCGAACAAGATGAATTCCAGTCCAATAACAGCCATTGTCTCTCCTCGTACTACAGTGTTTTCGTGGCCCGTTTAGCCATCATGGTCATGCTAGCAATTCTAATAGGGCTGCTCACCTTGCTGACATGGCATTTTACAAGGGTATACACAAAAAAATCATTACATACTCTAGCTTATGGCCTTCGTTACGAACTTCTACAGCGACCCATACTGCGAATGTGGAACATCTTCAATTCCACCGTTGATATAACGACAGCTCAGGTTAAGCTCTCGGAGTATGTGATCAAACGGTACAGCAAGCCCATTAACCAAGAGCAGCAAGTCGAGCTATACCAAGCAATGAGGGATGTGACATGGGCCCTATTTGCCAGTCACAGAGCGCTCAATTCAATAACTATAAACTACAGAAACGGTTTCGTCCAGGCTTTTCACAGAGATCATAGAAGCAACAATACATACTATATATATTCGGACCTAGTCAACTACTCGATCAGTGGGTCTTATGATATCAACAAGATTTCGTCTCATCAAGGATGGAACGACCAATCTATCCATGGCAATGTGTCGGCCATTTGGTACCGCGAGCCACTCAATCCGGTCAGTGGCGAAAAGATAGGGAAATCAAGCCCAATTCCACCCGATGATCTGATCAACATTGCGGGGATTTCAGAACTGCCTGACGGTGCAGCCTCATGGCATGTGGCAGTGAGTAAATTTACTGATTCGCCCCTGCTGTCAGCGGCATTGCCAGTTTGGGACTCGGCTAAAGAAAGGATAATGGCTGTTGTGGGTGTTACTACGGCACTTTATAGTGTAGGACAGTTGATGAAGGAGCTTGTGGAGTTTCATAGTGGACATATTTATTTGACCTCTCAAGAGGGTTGGTTGCTCTCTACTTCTACAAATACTCCTCTGTTGATGAATACAAGCACAGGACCAAAGCTTATGAGGGCTGTTGATTCAGAAGAACATGTGATTCGAGCTGGAGCCGAATGGTTACAGAAAGAATGTGGGAACAAGTTTCCCCCGAATCATGAGGTTCACATAGAGAATGCCAGGCTTGGCAACCATCTCTACTATATTGACTCGTTTTTCTTGAACCTAAAAAGGCTTCCTATGGTAGGGGTTATCATCATTCCAAGGAAATACATAATGGGGAAGGTGGATGAGAGAGCCTTTAAAACGTTGGTAATATTGATATCTGCATCCGTGTGCATATTAATCATTGGATGTGTGTGCATTTTCATATTGACAAACGGAGTGTCAAAGGAGATGAAACTAAGAGCAGAATTGATAAGCCATTTAGACGCTAGAAGGAAAGCAGAGGCATCAAGCAACTACAAAAGCCAGTTTCTAGCTAACATGAGTCATGAACTTCGAACACCTATGGCTGCAGTGATTGGATTACTGGACATTCTTATATGTGATGACTGTCTTACAAATGAGCAATATTCAACAATTACTCAGATTCGTAGATGCTCAAATGCTTTACTCCGGCTTCTCAACAACATTTTGGATCTCAGTAAGGTTGAATCTGGAAAACTGGTGCTGGAAAGGACTGAGTTTGATTTAGGGCGAGAACTTGAAGGACTCGTTGACATGTTCTCTGTGCAGTGCATTAATCACAATGTGGAGACTGTTCTAGATCTTTCTGATGATATACCAAAATTTGTTCAAGGAGACTCTGCTAGAGTTGTTCAAATTTTTGCAAACCTTATCAGCAATTCTATTAAGTTTACAACATCGGGCTACATTATTGTGCGAGGATGGTGTGAATTTCCGAATACTTTTAGTAACACCAGGAAGTTTTTCACCAATCAAAAAGAATCATGGTCTGCAGCTAAAACCAAGTTGGACCGACAGATATCCGATGGAAAAAGATACTGCAAGAAAGACAATAGAATGATTCTTTGGTTCGAGGTTGATGATACTGGCTGTGGAATTGATCCAAGCAAATGGGAGTCTGTATTTGAAAGCTTTGAGCAAGCTGACACATCAACAACTCGATTGCATGGTGGAACTGGTCTTGGCCTATGCATTGTACGAACATTGGTCAACCAAATGGGTGGAGAAATTAAAGTTGTTAAGAAGAATGGACCAGGGACTTTGATGCGACTATACTTGCTTCTCGGTGCACCTGAAGATGGCACGGGAGATCACTGTCAACTAAAACTTGCAGAAAATGACTTGACTATATTGCTCGCACTCAATGGCAAAATGAGTAGATTGATTATGTCAAGGTGGCTCCGCAGAAATGGAGTGTTCACCTGGGAAGCATCTGAGTGGAATGAACTGACACAAATTCTTCGGGAGCTCTTTCAAGGCCAAAACTACTCGAAAAATTCACCAAGTGATCAATGTTCACCAAATGAAGACTCGAACATACGAAACACAAGGGCCTCGATTTTCTTAATTGTAATTGATATTGGGCTACTTGATTTAAGCACAGGTATATGGAAGGAGCAGCTTAATTTCCTAGACAAGTATTATGAGATAGCGAAATTTGCATGGATACTTAACCATGATACTTCCAATACCATAAAGACGGAGCTTCGTAGCAAAGGACATCTATTAATGGTTAACAGACCACTATACAAGGCAAAAATGATTCACATTTTGGAAGCTGTGATGAAGGAAATTAATCTCGAGCAGCAAAAGAAAATGAATTCTGATACACACGTGTGTCTCGAGATTGATCCCATTCACTCCGATGCTGAAAGCTCAAACGATTCTGATAAGTCAGAGATGGGAAGTTGTAATTCCGTAAGCACATTTTATAATGAAGATAAGCAACGAGGGCATCTATCTAAACCATCTCTGTCACATTATGATGCAGTTAGCAATTGCTTTGTTGAGTTAACTGAAGTTTATCTAAAAGAAGATGAGTTTAGCAGAAATGGGCATGAAAGTTCAAAATGCCATGGTCAAAATTTGACTGGTACGTTTTCTAGAGAGCAAGGTAGTTTGTACTCAAATAAGGCCAAGAATGGACAAAAATCTCTTCAAGGCCTACACATACTGCTGGCAGAGGATACACCGGTATTGCAAAGAGTTGCAACGATAATGCTGGAAAAGTTAGGGGCTATGGTTGCTGCAGTGGGAGATGGGGTGCAGGCAGTGGATGCTCTAAAATTTATGCATGAGGCAGAGAAGTGTAGAGGACAACCTTCCCCAGAAAATGACAGCACGATAACTCGGTCAAGAATATGCGATACCCCACCATACGACTTGATCCTAATGGACTGTCAAATGCCAAAGATGGATGGGTATGAAGCAACGAAAGCGATAAGAAGGTCAGAACAAGAGACCGGTTCACACATCCCGATCGTTGCATTGACAGCCCACGCAATGTCTTCAGATGAAGCCAAATGCTTGGAAGTGGGTATGGATGCCTATCTAACAAAGCCAATTGACTGCAAGCTCATGGTTTCCACCATTCTTTCCTTAACTAAGAGAAACCCGTAA

Network for GWHGAAZE014952

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00512.26	HisKA	501	566	6.80E-15
PF02518.27	HATPase_c	613	763	8.70E-22
PF00072.25	Response_reg	1124	1197	1.50E-17

Protein Sequence

>GWHPAAZE014959
QIELPLISFESSPPPNKPMASLLKRLSKRISGFANPPENNQSPRSCERTFHRDVEQDEFQSNNSHCLSSYYSVFVARLAIMVMLAILIGLLTLLTWHFTRVYTKKSLHTLAYGLRYELLQRPILRMWNIFNSTVDITTAQVKLSEYVIKRYSKPINQEQQVELYQAMRDVTWALFASHRALNSITINYRNGFVQAFHRDHRSNNTYYIYSDLVNYSISGSYDINKISSHQGWNDQSIHGNVSAIWYREPLNPVSGEKIGKSSPIPPDDLINIAGISELPDGAASWHVAVSKFTDSPLLSAALPVWDSAKERIMAVVGVTTALYSVGQLMKELVEFHSGHIYLTSQEGWLLSTSTNTPLLMNTSTGPKLMRAVDSEEHVIRAGAEWLQKECGNKFPPNHEVHIENARLGNHLYYIDSFFLNLKRLPMVGVIIIPRKYIMGKVDERAFKTLVILISASVCILIIGCVCIFILTNGVSKEMKLRAELISHLDARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILICDDCLTNEQYSTITQIRRCSNALLRLLNNILDLSKVESGKLVLERTEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDIPKFVQGDSARVVQIFANLISNSIKFTTSGYIIVRGWCEFPNTFSNTRKFFTNQKESWSAAKTKLDRQISDGKRYCKKDNRMILWFEVDDTGCGIDPSKWESVFESFEQADTSTTRLHGGTGLGLCIVRTLVNQMGGEIKVVKKNGPGTLMRLYLLLGAPEDGTGDHCQLKLAENDLTILLALNGKMSRLIMSRWLRRNGVFTWEASEWNELTQILRELFQGQNYSKNSPSDQCSPNEDSNIRNTRASIFLIVIDIGLLDLSTGIWKEQLNFLDKYYEIAKFAWILNHDTSNTIKTELRSKGHLLMVNRPLYKAKMIHILEAVMKEINLEQQKKMNSDTHVCLEIDPIHSDAESSNDSDKSEMGSCNSVSTFYNEDKQRGHLSKPSLSHYDAVSNCFVELTEVYLKEDEFSRNGHESSKCHGQNLTGTFSREQGSLYSNKAKNGQKSLQGLHILLAEDTPVLQRVATIMLEKLGAMVAAVGDGVQAVDALKFMHEAEKCRGQPSPENDSTITRSRICDTPPYDLILMDCQMPKMDGYEATKAIRRSEQETGSHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDCKLMVSTILSLTKRNP

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0000160	biological_process	phosphorelay signal transduction system
GO:0007165	biological_process	signal transduction
GO:0016310	biological_process	phosphorylation
GO:0000155	molecular_function	phosphorelay sensor kinase activity
GO:0016772	molecular_function	transferase activity, transferring phosphorus-containing groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.815
	SRR3591706	second leaf	6.646
	SRR3591707	mature leaf	17.142
	SRR3591708	Shoot apex	3.378
	SRR3591709	Stem	13.987
	SRR3591710	White floral bud	5.271
	SRR3591711	White flower	3.384
	SRR3591712	Green floral bud	5.273
	SRR3591713	Yellow flower	0.884
SRP173429	SRR8316895	Juvenile bud stage	1.012
	SRR8316896	Juvenile bud stage	1.583
	SRR8316897	Juvenile bud stage	0.732
	SRR8316894	Third green stage	0.951
	SRR8316900	Third green stage	4.090
	SRR8316901	Third green stage	2.763
	SRR8316898	Complete white stage	0.591
	SRR8316899	Complete white stage	10.004
	SRR8316903	Complete white stage	2.228
	SRR8316902	Silver flowering stage	1.713
	SRR8316904	Silver flowering stage	1.320
	SRR8316905	Silver flowering stage	0.019
	SRR8316906	Gold flowering stage	0.098
	SRR8316907	Gold flowering stage	0.071
	SRR8316908	Gold flowering stage	0.710
SRP132670	SRR6706286	Control	3.099
	SRR6706287	Light intensity 50%	3.178
	SRR6706288	Light intensity 20%	2.868
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.940
	CNS0095593	Slightly white alabastrum(diploid) 2	1.417
	CNS0095594	Slightly white alabastrum(diploid) 3	1.202
	CNS0095595	Whole white alabastrum(diploid) 2	1.222
	CNS0095596	Whole white alabastrum(diploid) 3	0.793
	CNS0095597	Whole white alabastrum(diploid) 4	0.776
	CNS0095598	Silvery flower (diploied) 1	2.730
	CNS0095599	Silvery flower (diploied) 2	1.963
	CNS0095600	Silvery flower (diploied) 3	1.129
	CNS0095601	Golden flower (diploid) 1	1.648
	CNS0095602	Golden flower (diploid) 2	1.846
	CNS0095603	Golden flower (diploid) 3	1.744
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.934
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.387
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.749
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.575
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.487
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.432
	CNS0095610	Silvery flower (tetraploid) 1	0.513
	CNS0095611	Silvery flower (tetraploid) 2	0.544
	CNS0095612	Silvery flower (tetraploid) 3	0.207
	CNS0095613	Golden flower (tetraploid) 1	0.063
	CNS0095614	Golden flower (tetraploid) 2	0.313
	CNS0095615	Golden flower (tetraploid) 3	0.210
CRA001975	CRR073297	Stem 1	1.062
	CRR073298	Stem 2	0.970
	CRR073299	Stem 3	0.683
	CRR073300	Leaf 1	2.073
	CRR073301	Leaf 2	1.592
	CRR073302	Leaf 3	1.844
	CRR073303	Juvenile bud 1	2.599
	CRR073304	Juvenile bud 2	0.991
	CRR073305	Juvenile bud 3	6.829
	CRR073306	Third green 1	0.001
	CRR073307	Third green 2	0.205
	CRR073308	Third green 3	0.283
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.019
	CRR073312	Silver flowering 1	0.157
	CRR073313	Silver flowering 2	0.044
	CRR073314	Silver flowering 3	0.294
	CRR073315	Gold flowering 1	5.477
	CRR073316	Gold flowering 2	12.416
	CRR073317	Gold flowering 3	4.052
	CRR073318	Tawny withering 1	2.767
	CRR073319	Tawny withering 2	4.394
	CRR073320	Tawny withering 3	2.574