Gene detail

Detail information of GWHGAAZE014953

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008337994.1	1.9526E-163	PREDICTED: proteasome subunit alpha type-7 [Malus domestica]
Swissprot	tr\|Q9SXU1\|PSA7_CICAR	1E-158	Proteasome subunit alpha type-7
trEMBL	tr\|A0A067G6V9\|A0A067G6V9_CITSI	4E-162	Proteasome subunit alpha type {ECO:0000256\|RuleBase:RU000551}
TAIR10	AT5G66140.1	4E-118	proteasome alpha subunit D2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	22202787	22209674	+
GWHAAZE00000004	mRNA	22202787	22209674	+
GWHAAZE00000004	exon	22202787	22202959	+
GWHAAZE00000004	exon	22206646	22207060	+
GWHAAZE00000004	exon	22209313	22209674	+
GWHAAZE00000004	CDS	22202787	22202959	+
GWHAAZE00000004	CDS	22206646	22207060	+
GWHAAZE00000004	CDS	22209313	22209474	+
GWHAAZE00000004	three_prime_UTR	22209475	22209674	+

Transcript Sequence
>GWHTAAZE014967 ATGGCTAGGTACGACAGAGCAATAACGGTTTTCTCCCCCGACGGCCATCTCTTCCAAGTCGAGTACGCTCTCGAAGCCGTTAGAAAGGGCAACGCCGCCGTCGGCGTTAGAGGCACCGACACCGTTGTTCTCGGCGTTGAAAAAAAGTCTACCGTCAAACTCCAAGACTCCAGATCGGTGAGGAAGATTGTGAATCTAGACAATCACATCGCACTGGCCTGTGCTGGGCTCAAAGCAGACGCCCGTGTCCTTATAAACAGGGCAAGAATCGAATGTCAGAGCCACAAGCTTACTGTTGAGGACCCCGTGACTGTGGAGTATATCACCCGTTACATTGCAGGTCTTCAGCAGAAGTACACACAAAGTGGAGGTGTAAGGCCCTTTGGTCTTTCAACCTTGATTGTGGGTTTTGACCCTTACAATGATGTACCGTCACTATACCAGACAGATCCTTCTGGGACTTTCTCTGCTTGGAAAGCCAATGCAACTGGGAGAAACTCTAATTCAATGAGGGAGTTTCTTGAAAAGAATTATAAAGAAACTTCTGGCCAAGAAACTACAAAGCTTGCAATTCGTGCGCTGCTTGAAGTTGTTGAGAGTGGTGGAAAGAACATAGAAGTAGCTGTGATGACTAAGGATAAAGGTCTGCGGCAACTTGATGAAGCCGAAATCGATGCAATTGTTGCCGAGATTGAAGCGGAGAAAGCGGCTGCAGAGGCTGCAAAGAAGGGCCCTCAAAGGGATACATAAACTCTGTTTTTCCTTTCCTTATAAACAATTAAATGGTACTCCATCTTCAATATTTCATTTTGACTTATTTGCACTCATTTGTTGGAATCTTTTAATACGGTTTGGAATCATTATCATTTAATGTTTGATACAGTTGGATTATGCTTGTGAAGGTTGAGGTCATTTATTTTAATATAATTGATGAAGCCTAATGTTTTCAA

Network for GWHGAAZE014953

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10584.10	Proteasome_A_N	4	26	4.90E-14
PF00227.27	Proteasome	27	210	1.40E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02731	PSMA7	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0051603	biological_process	proteolysis involved in cellular protein catabolic process
GO:0019773	cellular_component	proteasome core complex, alpha-subunit complex
GO:0005839	cellular_component	proteasome core complex
GO:0004175	molecular_function	endopeptidase activity
GO:0004298	molecular_function	threonine-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	185.278
	SRR3591706	second leaf	103.416
	SRR3591707	mature leaf	79.259
	SRR3591708	Shoot apex	184.685
	SRR3591709	Stem	141.122
	SRR3591710	White floral bud	121.961
	SRR3591711	White flower	180.660
	SRR3591712	Green floral bud	153.547
	SRR3591713	Yellow flower	159.919
SRP173429	SRR8316895	Juvenile bud stage	86.136
	SRR8316896	Juvenile bud stage	110.685
	SRR8316897	Juvenile bud stage	63.929
	SRR8316894	Third green stage	49.080
	SRR8316900	Third green stage	168.067
	SRR8316901	Third green stage	160.363
	SRR8316898	Complete white stage	79.926
	SRR8316899	Complete white stage	208.400
	SRR8316903	Complete white stage	97.247
	SRR8316902	Silver flowering stage	61.707
	SRR8316904	Silver flowering stage	68.873
	SRR8316905	Silver flowering stage	41.438
	SRR8316906	Gold flowering stage	166.980
	SRR8316907	Gold flowering stage	153.419
	SRR8316908	Gold flowering stage	165.043
SRP132670	SRR6706286	Control	167.752
	SRR6706287	Light intensity 50%	171.301
	SRR6706288	Light intensity 20%	187.422
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	128.930
	CNS0095593	Slightly white alabastrum(diploid) 2	137.013
	CNS0095594	Slightly white alabastrum(diploid) 3	112.861
	CNS0095595	Whole white alabastrum(diploid) 2	111.091
	CNS0095596	Whole white alabastrum(diploid) 3	105.908
	CNS0095597	Whole white alabastrum(diploid) 4	110.244
	CNS0095598	Silvery flower (diploied) 1	96.788
	CNS0095599	Silvery flower (diploied) 2	125.261
	CNS0095600	Silvery flower (diploied) 3	153.930
	CNS0095601	Golden flower (diploid) 1	112.310
	CNS0095602	Golden flower (diploid) 2	140.634
	CNS0095603	Golden flower (diploid) 3	132.089
	CNS0095604	Slightly white alabastrum(tetraploid) 1	131.641
	CNS0095605	Slightly white alabastrum(tetraploid) 2	119.424
	CNS0095606	Slightly white alabastrum(tetraploid) 3	169.790
	CNS0095607	Whole white alabastrum(tetraploid) 1	90.560
	CNS0095608	Whole white alabastrum(tetraploid) 2	87.887
	CNS0095609	Whole white alabastrum(tetraploid) 3	129.546
	CNS0095610	Silvery flower (tetraploid) 1	172.568
	CNS0095611	Silvery flower (tetraploid) 2	199.394
	CNS0095612	Silvery flower (tetraploid) 3	162.111
	CNS0095613	Golden flower (tetraploid) 1	165.413
	CNS0095614	Golden flower (tetraploid) 2	151.353
	CNS0095615	Golden flower (tetraploid) 3	195.657
CRA001975	CRR073297	Stem 1	137.512
	CRR073298	Stem 2	137.340
	CRR073299	Stem 3	178.960
	CRR073300	Leaf 1	165.373
	CRR073301	Leaf 2	163.827
	CRR073302	Leaf 3	222.057
	CRR073303	Juvenile bud 1	238.256
	CRR073304	Juvenile bud 2	226.489
	CRR073305	Juvenile bud 3	172.438
	CRR073306	Third green 1	147.851
	CRR073307	Third green 2	145.661
	CRR073308	Third green 3	121.337
	CRR073309	Second white 1	198.718
	CRR073310	Second white 2	174.242
	CRR073311	Second white 3	112.183
	CRR073312	Silver flowering 1	128.241
	CRR073313	Silver flowering 2	135.166
	CRR073314	Silver flowering 3	96.156
	CRR073315	Gold flowering 1	142.931
	CRR073316	Gold flowering 2	171.181
	CRR073317	Gold flowering 3	118.929
	CRR073318	Tawny withering 1	160.026
	CRR073319	Tawny withering 2	156.125
	CRR073320	Tawny withering 3	188.778