Gene detail

Detail information of GWHGAAZE014954

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009796807.1	0	PREDICTED: L-ascorbate peroxidase 3, peroxisomal-like [Nicotiana sylvestris]
Swissprot	tr\|Q42564\|APX3_ARATH	2E-161	L-ascorbate peroxidase 3, peroxisomal (Precursor)
trEMBL	tr\|M0ZW54\|M0ZW54_SOLTU	5E-180	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400009380}
TAIR10	AT4G35000.1	1E-127	ascorbate peroxidase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	22211529	22215508	-
GWHAAZE00000004	mRNA	22211529	22215508	-
GWHAAZE00000004	exon	22211529	22211729	-
GWHAAZE00000004	exon	22212000	22212102	-
GWHAAZE00000004	exon	22212215	22212294	-
GWHAAZE00000004	exon	22212385	22212467	-
GWHAAZE00000004	exon	22213156	22213204	-
GWHAAZE00000004	exon	22213310	22213375	-
GWHAAZE00000004	exon	22214103	22214152	-
GWHAAZE00000004	exon	22214475	22214599	-
GWHAAZE00000004	exon	22215396	22215508	-
GWHAAZE00000004	CDS	22215396	22215508	-
GWHAAZE00000004	CDS	22214475	22214599	-
GWHAAZE00000004	CDS	22214103	22214152	-
GWHAAZE00000004	CDS	22213310	22213375	-
GWHAAZE00000004	CDS	22213156	22213204	-
GWHAAZE00000004	CDS	22212385	22212467	-
GWHAAZE00000004	CDS	22212215	22212294	-
GWHAAZE00000004	CDS	22212000	22212102	-
GWHAAZE00000004	CDS	22211529	22211729	-

Transcript Sequence
>GWHTAAZE014968 ATGGCAGCACCTATAGTGAATGCTGAGTATTTGAAGGAAATCGAGAAGGCTCGTAGAGACCTTCGCGCTCTCATCTCTATGAAGAATTGTGCACCTATCATGCTTCGCTTAGCGTGGCATGATGCAGGTACTTATGATGCTAAAACGAAGACAGGAGGACCCAATGGTTCAATCAGGAACGAAGAAGAGTACAAGCATAGCTCAAACAATGGTTTGAAAATCGCAATTGATCTTTGTGAAGAGATAAAAGCTAGACATCCAATGATTACATATGCTGATCTCTACCAGCTTGCTGGGGTTGTTGCAGTTGAGGTCACTGGAGGCCCTACCATTGACTTTGTCCCGGGAAGAAAGGATTCAATGGAATCTCCGAAAGAAGGGCGCCTTCCAGATGCCAAACAAGGCGCTCCACATCTAAGGGACATCTTTTATCGGATGGGTTTATCTGACAAGGATATCGTGGCACTGTCAGGCGGCCACACTTTGGGAAGGGCACATCCAGAGAGATCAGGTTTTGATGGTCCTTGGACAAGAGAACCTTTAAAATTTGACAACTCCTACTTTGTAGAGCTTCTGAAAGGGGATTCGGAGGGACTTTTAAAACTTCCCACGGATAAAGCTCTAGTGGAGGACCCCAAGTTCCGTCCATATGTCGAACTATATGCGAAGGATGAGGAGGAATTCTTCAAAGATTATGCAGCATCACACAAGAAACTGTCGGAGCTAGGGTTTACTCCACCATCATCTTGTCTCGGAATAAGTGCAAAAAATGCAACAGTATTGGCTCATAGTGCTGTGGGGATGGCTGTTGCTGCAGCTGTGGTGGTCCTTGGTTACCTCTATGAAGTTAACAGAAGAGTGGTTAAGTGA

Network for GWHGAAZE014954

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	18	224	4.90E-49

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00434	E1.11.1.11	Metabolic pathways	map01100
		Ascorbate and aldarate metabolism	map00053
		Glutathione metabolism	map00480

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.353
	SRR3591706	second leaf	18.812
	SRR3591707	mature leaf	6.341
	SRR3591708	Shoot apex	20.342
	SRR3591709	Stem	21.603
	SRR3591710	White floral bud	11.060
	SRR3591711	White flower	6.019
	SRR3591712	Green floral bud	20.773
	SRR3591713	Yellow flower	7.291
SRP173429	SRR8316895	Juvenile bud stage	7.883
	SRR8316896	Juvenile bud stage	13.346
	SRR8316897	Juvenile bud stage	2.098
	SRR8316894	Third green stage	6.509
	SRR8316900	Third green stage	20.306
	SRR8316901	Third green stage	22.420
	SRR8316898	Complete white stage	4.389
	SRR8316899	Complete white stage	22.592
	SRR8316903	Complete white stage	6.465
	SRR8316902	Silver flowering stage	3.324
	SRR8316904	Silver flowering stage	4.687
	SRR8316905	Silver flowering stage	1.620
	SRR8316906	Gold flowering stage	4.618
	SRR8316907	Gold flowering stage	9.785
	SRR8316908	Gold flowering stage	1.889
SRP132670	SRR6706286	Control	39.147
	SRR6706287	Light intensity 50%	32.732
	SRR6706288	Light intensity 20%	34.490
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.863
	CNS0095593	Slightly white alabastrum(diploid) 2	39.158
	CNS0095594	Slightly white alabastrum(diploid) 3	35.901
	CNS0095595	Whole white alabastrum(diploid) 2	31.284
	CNS0095596	Whole white alabastrum(diploid) 3	23.856
	CNS0095597	Whole white alabastrum(diploid) 4	32.596
	CNS0095598	Silvery flower (diploied) 1	17.357
	CNS0095599	Silvery flower (diploied) 2	24.324
	CNS0095600	Silvery flower (diploied) 3	16.906
	CNS0095601	Golden flower (diploid) 1	38.660
	CNS0095602	Golden flower (diploid) 2	25.286
	CNS0095603	Golden flower (diploid) 3	22.334
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.049
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.010
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.058
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.148
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.879
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.396
	CNS0095610	Silvery flower (tetraploid) 1	3.530
	CNS0095611	Silvery flower (tetraploid) 2	4.481
	CNS0095612	Silvery flower (tetraploid) 3	4.311
	CNS0095613	Golden flower (tetraploid) 1	3.480
	CNS0095614	Golden flower (tetraploid) 2	5.003
	CNS0095615	Golden flower (tetraploid) 3	1.008
CRA001975	CRR073297	Stem 1	15.629
	CRR073298	Stem 2	14.128
	CRR073299	Stem 3	10.913
	CRR073300	Leaf 1	20.014
	CRR073301	Leaf 2	24.470
	CRR073302	Leaf 3	25.161
	CRR073303	Juvenile bud 1	26.705
	CRR073304	Juvenile bud 2	15.951
	CRR073305	Juvenile bud 3	20.722
	CRR073306	Third green 1	10.476
	CRR073307	Third green 2	12.681
	CRR073308	Third green 3	10.224
	CRR073309	Second white 1	6.704
	CRR073310	Second white 2	9.100
	CRR073311	Second white 3	4.574
	CRR073312	Silver flowering 1	5.872
	CRR073313	Silver flowering 2	2.825
	CRR073314	Silver flowering 3	5.290
	CRR073315	Gold flowering 1	32.412
	CRR073316	Gold flowering 2	39.628
	CRR073317	Gold flowering 3	18.870
	CRR073318	Tawny withering 1	18.031
	CRR073319	Tawny withering 2	16.119
	CRR073320	Tawny withering 3	18.453