Gene detail

Detail information of GWHGAAZE014955

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009612581.1	PREDICTED: 3-dehydroquinate synthase, chloroplastic [Nicotiana tomentosiformis]
Swissprot	tr\|U3KRF2\|DHQS_ACTCH	3-dehydroquinate synthase, chloroplastic (Precursor)
trEMBL	tr\|A0A068U2N1\|A0A068U2N1_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313\|EMBL:CDP01868.1}
TAIR10	AT5G66120.2	3-dehydroquinate synthase, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	22241687	22246597	+
GWHAAZE00000004	mRNA	22241687	22246597	+
GWHAAZE00000004	exon	22241687	22242057	+
GWHAAZE00000004	exon	22243602	22243806	+
GWHAAZE00000004	exon	22243898	22244065	+
GWHAAZE00000004	exon	22244401	22244627	+
GWHAAZE00000004	exon	22244749	22244872	+
GWHAAZE00000004	exon	22245724	22245786	+
GWHAAZE00000004	exon	22245876	22246019	+
GWHAAZE00000004	exon	22246114	22246597	+
GWHAAZE00000004	CDS	22241687	22242057	+
GWHAAZE00000004	CDS	22243602	22243806	+
GWHAAZE00000004	CDS	22243898	22244065	+
GWHAAZE00000004	CDS	22244401	22244627	+
GWHAAZE00000004	CDS	22244749	22244872	+
GWHAAZE00000004	CDS	22245724	22245786	+
GWHAAZE00000004	CDS	22245876	22246019	+
GWHAAZE00000004	CDS	22246114	22246245	+
GWHAAZE00000004	three_prime_UTR	22246246	22246597	+

Transcript Sequence
>GWHTAAZE014969 ATGGCGGCCTCTTATTCAGTACTTCCAAAACCCATTTCCTCTTCTCTCTCTACCCACCAACAAAGACACAACTCTCTGTCCCAACCAATCTCCGGTAATTTATCATTCCGGTTCCGGAACTCAGATACTTTTTCCCTCCAATATTCTTCTTCTGTTTCTCTCGGATGCGGATTTGAGACGAGTGGAGCGCGATTCAAAGTATTTTCCAGCTCGGCTACTCAAGTTATGGATCAGTCACCTAGTAAAAGTGCTAATTCCACCGTTCCTACCACCGTTGATGTCGATTTGGGTAACCGGAGCTACCCGATTTATATTGGATCTGGACTCCTTGATCAGCCTGATCTTCTTCAGAGGTACTTGATTTCCCTATTGGTTCTGTTGTGTCAAATCTACCCTCTAACTAACAATTCATGGCTATTCTGCAGGCATGTTCATGGAAAGAGAGTCCTTGTGGTCACTAACACCACAATTGCGCCGCTATATCTGGATAAAGTTATTCACGCTTTAACAGTAGGAAATCCAAACGTTACAGTTGAGAGTGTGATTCTACCAGATGGCGAGCAGTACAAGAACATGGATACACTCATGAAAGTCTTTGACAAGGCAATTGAGTCGAGGTTAGATCGTCGTTCTACATTTGTTGCCCTTGGTGGCGGTGTCATTGGTGACATGTGTGGTTATGCTGCTGCATCCTTCCTCCGTGGAGTTAACTTTATTCAAATTCCTACAACCGTTATGGCCCAGGTGGATTCTTCTGTTGGAGGGAAAACTGGAATAAACCACCGGCTTGGGAAGAATTTAATTGGTGCCTTCTACCAACCACAATGTGTGCTCGTTGATACCGACACACTGAATACATTACCAGAAAGAGAATTAGCATCGGGATTTGCAGAGGTTATAAAGTATGGCCTTATTAGAGACGCTGAGTTTTTTGAGTGGCAAGAAAAGAACATGGACGCATTATTGGCAAGGGACCCTAGTGCATTGGCTTATGCTATCAAGCGTTCATGTGAAAACAAGGCTGAGGTGGTATCATTAGATGAGAAGGAAAGTGGGCTAAGGGCTACACTGAACTTGGGTCACACTTTCGGTCATGCAATAGAAACAGGATGTGGGTACGGGAAGTGGCTTCACGGAGAAGCTGTGGCAGCTGGCACGGTTATGGCTGTTGACATGTCATACCGGCTCGGTTGGATTGACGAATCAATTGTGAAACGGGTACACACAATCCTAAAACAGGCAAAGCTGCCCACCGTTCCTGATGAAACCGTGACTGTTGATATGTTCAAGTCAATCATGGCGGTTGATAAAAAGGTTGCTGATGGGTTGCTAAGGCTTATCCTTCTCAAAGGTCCACTTGGCAACTGCGTTTTTACAGGCGACTACGACAGAAAGGCCCTCGACGAAACACTTCATGCATTTTGCAAGTCCTGATCCTGAATGTGGCTGATATTGTTTTATCAATCCTTGTACCATATCTTTTCTCTCTCACTTGGTATTCATATGGACTTGTGTGATTAATTATTGTAGCAACTGGTGTAGCTTTTCACCCGGGTTTCTGTATCCCATTTGTAACTGTCAGTGCGAACCTCACCCTTTAATAAGTCTGAACCTTTTTTTATCGGAAATCATTTGTCGTTGAATATATATGCAATAATCGAAGGATAAAATATTAGTACGTTACTGAAGGAATGATGAACATATTTATGGTACAATTTTGATGAACTGACATTGTATGATATTTAGTTGATTATTTGTAATAATAATGTTGAAGACTGTCAAGTAA

Network for GWHGAAZE014955

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01761.21	DHQ_synthase	181	439	1.40E-106

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01735	aroB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

GO term	Ontology	Name
GO:0009073	biological_process	aromatic amino acid family biosynthetic process
GO:0005737	cellular_component	cytoplasm
GO:0003856	molecular_function	3-dehydroquinate synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	112.783
	SRR3591706	second leaf	164.250
	SRR3591707	mature leaf	289.177
	SRR3591708	Shoot apex	97.504
	SRR3591709	Stem	174.635
	SRR3591710	White floral bud	101.188
	SRR3591711	White flower	108.561
	SRR3591712	Green floral bud	102.827
	SRR3591713	Yellow flower	111.337
SRP173429	SRR8316895	Juvenile bud stage	73.636
	SRR8316896	Juvenile bud stage	94.527
	SRR8316897	Juvenile bud stage	46.055
	SRR8316894	Third green stage	38.139
	SRR8316900	Third green stage	126.673
	SRR8316901	Third green stage	118.869
	SRR8316898	Complete white stage	52.581
	SRR8316899	Complete white stage	138.761
	SRR8316903	Complete white stage	85.288
	SRR8316902	Silver flowering stage	53.939
	SRR8316904	Silver flowering stage	73.794
	SRR8316905	Silver flowering stage	42.130
	SRR8316906	Gold flowering stage	146.421
	SRR8316907	Gold flowering stage	141.178
	SRR8316908	Gold flowering stage	159.638
SRP132670	SRR6706286	Control	88.417
	SRR6706287	Light intensity 50%	100.011
	SRR6706288	Light intensity 20%	104.679
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	79.983
	CNS0095593	Slightly white alabastrum(diploid) 2	91.422
	CNS0095594	Slightly white alabastrum(diploid) 3	72.988
	CNS0095595	Whole white alabastrum(diploid) 2	72.622
	CNS0095596	Whole white alabastrum(diploid) 3	58.314
	CNS0095597	Whole white alabastrum(diploid) 4	62.585
	CNS0095598	Silvery flower (diploied) 1	85.884
	CNS0095599	Silvery flower (diploied) 2	89.914
	CNS0095600	Silvery flower (diploied) 3	112.336
	CNS0095601	Golden flower (diploid) 1	75.586
	CNS0095602	Golden flower (diploid) 2	109.824
	CNS0095603	Golden flower (diploid) 3	109.391
	CNS0095604	Slightly white alabastrum(tetraploid) 1	97.930
	CNS0095605	Slightly white alabastrum(tetraploid) 2	86.427
	CNS0095606	Slightly white alabastrum(tetraploid) 3	173.516
	CNS0095607	Whole white alabastrum(tetraploid) 1	59.964
	CNS0095608	Whole white alabastrum(tetraploid) 2	53.040
	CNS0095609	Whole white alabastrum(tetraploid) 3	124.839
	CNS0095610	Silvery flower (tetraploid) 1	156.048
	CNS0095611	Silvery flower (tetraploid) 2	154.473
	CNS0095612	Silvery flower (tetraploid) 3	146.112
	CNS0095613	Golden flower (tetraploid) 1	129.575
	CNS0095614	Golden flower (tetraploid) 2	166.281
	CNS0095615	Golden flower (tetraploid) 3	111.960
CRA001975	CRR073297	Stem 1	84.668
	CRR073298	Stem 2	82.452
	CRR073299	Stem 3	83.270
	CRR073300	Leaf 1	104.913
	CRR073301	Leaf 2	98.480
	CRR073302	Leaf 3	96.115
	CRR073303	Juvenile bud 1	100.160
	CRR073304	Juvenile bud 2	85.199
	CRR073305	Juvenile bud 3	116.046
	CRR073306	Third green 1	78.214
	CRR073307	Third green 2	62.566
	CRR073308	Third green 3	67.190
	CRR073309	Second white 1	88.332
	CRR073310	Second white 2	76.834
	CRR073311	Second white 3	77.443
	CRR073312	Silver flowering 1	81.153
	CRR073313	Silver flowering 2	82.363
	CRR073314	Silver flowering 3	87.923
	CRR073315	Gold flowering 1	77.609
	CRR073316	Gold flowering 2	103.065
	CRR073317	Gold flowering 3	94.821
	CRR073318	Tawny withering 1	71.597
	CRR073319	Tawny withering 2	61.498
	CRR073320	Tawny withering 3	66.229