Gene detail

Detail information of GWHGAAZE014956

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009612726.1	1.728E-129	PREDICTED: rac-like GTP-binding protein RHO1 [Nicotiana tomentosiformis]
Swissprot	tr\|O04369\|RAC1_LOTJA	4E-126	Rac-like GTP-binding protein RAC1 (Precursor)
trEMBL	tr\|K4B692\|K4B692_SOLLC	4E-129	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc02g062020.2.1}
TAIR10	AT4G35950.1	5E-97	RAC-like 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	22250040	22253794	+
GWHAAZE00000004	mRNA	22250040	22253794	+
GWHAAZE00000004	exon	22250040	22250138	+
GWHAAZE00000004	exon	22251281	22251368	+
GWHAAZE00000004	exon	22251476	22251585	+
GWHAAZE00000004	exon	22251721	22251784	+
GWHAAZE00000004	exon	22252654	22252718	+
GWHAAZE00000004	exon	22252814	22252879	+
GWHAAZE00000004	exon	22253693	22253794	+
GWHAAZE00000004	CDS	22250040	22250138	+
GWHAAZE00000004	CDS	22251281	22251368	+
GWHAAZE00000004	CDS	22251476	22251585	+
GWHAAZE00000004	CDS	22251721	22251784	+
GWHAAZE00000004	CDS	22252654	22252718	+
GWHAAZE00000004	CDS	22252814	22252879	+
GWHAAZE00000004	CDS	22253693	22253794	+

Transcript Sequence
>GWHTAAZE014970 ATGAGCGCTTCGAGATTCATAAAGTGCGTCACTGTGGGTGACGGTGCCGTCGGCAAGACTTGCCTCTTGATTTCTTATACCAGCAACACCTTCCCCACGGACTATGTGCCGACTGTATTTGACAATTTCAGTGCAAATGTGGTCGTCAATGGGAGCACGGTTAACTTAGGCTTGTGGGACACTGCTGGACAGGAGGATTATAATAGGTTGAGACCATTGAGCTATCGTGGGGCAGATGTTTTCATCTTGGCTTTTTCTCTCATTAGCAAGGCCAGCTATGAAAATGTTTCCAAGAAGTGGATTCCCGAGTTGAAACACTATGCCCCTGGCATCCCAATAGTTCTTGTTGGAACAAAACTTGATCTTCGGGACGATAAGCAATTCTTTGAAGACCATCCTGGTGCCGTGCCCATTAGCACAATTCAGGGAGAGGAGCTAAAGAAGATGATAGGCGCACCTGCTTACATTGAATGTAGTGCAAAAACACAGGAGAATGTGAAGTCGGTTTTCGACGCCGCCATCAAAGTTGTGCTTCAGCCTCCAAAGACAAAGAAAAAGAAGGGGAAGGGGCAGAAAGCGTGCTCCATATTGTGA

Network for GWHGAAZE014956

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00071.23	Ras	8	178	2.20E-52

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04392	RAC1	Ras signaling pathway	map04014
		Rap1 signaling pathway	map04015
		MAPK signaling pathway	map04010
		MAPK signaling pathway - fly	map04013
		Wnt signaling pathway	map04310
		VEGF signaling pathway	map04370
		Sphingolipid signaling pathway	map04071
		cAMP signaling pathway	map04024
		PI3K-Akt signaling pathway	map04151
		Phagosome	map04145
		Focal adhesion	map04510
		Adherens junction	map04520
		Tight junction	map04530
		Regulation of actin cytoskeleton	map04810
		Toll-like receptor signaling pathway	map04620
		Natural killer cell mediated cytotoxicity	map04650
		B cell receptor signaling pathway	map04662
		Fc epsilon RI signaling pathway	map04664
		Fc gamma R-mediated phagocytosis	map04666
		Leukocyte transendothelial migration	map04670
		Chemokine signaling pathway	map04062
		Pancreatic secretion	map04972
		Neurotrophin signaling pathway	map04722
		Axon guidance	map04360
		Axon regeneration	map04361
		Osteoclast differentiation	map04380

Gene Ontology

GO term	Ontology	Name
GO:0007264	biological_process	small GTPase mediated signal transduction
GO:0005525	molecular_function	GTP binding
GO:0003924	molecular_function	GTPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	78.845
	SRR3591706	second leaf	46.966
	SRR3591707	mature leaf	12.154
	SRR3591708	Shoot apex	58.393
	SRR3591709	Stem	35.530
	SRR3591710	White floral bud	37.815
	SRR3591711	White flower	7.392
	SRR3591712	Green floral bud	78.233
	SRR3591713	Yellow flower	2.962
SRP173429	SRR8316895	Juvenile bud stage	69.383
	SRR8316896	Juvenile bud stage	112.886
	SRR8316897	Juvenile bud stage	47.058
	SRR8316894	Third green stage	30.855
	SRR8316900	Third green stage	89.890
	SRR8316901	Third green stage	92.976
	SRR8316898	Complete white stage	1.142
	SRR8316899	Complete white stage	12.027
	SRR8316903	Complete white stage	2.240
	SRR8316902	Silver flowering stage	0.975
	SRR8316904	Silver flowering stage	1.563
	SRR8316905	Silver flowering stage	0.696
	SRR8316906	Gold flowering stage	1.337
	SRR8316907	Gold flowering stage	1.139
	SRR8316908	Gold flowering stage	0.964
SRP132670	SRR6706286	Control	61.602
	SRR6706287	Light intensity 50%	60.808
	SRR6706288	Light intensity 20%	51.481
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	78.228
	CNS0095593	Slightly white alabastrum(diploid) 2	58.006
	CNS0095594	Slightly white alabastrum(diploid) 3	85.761
	CNS0095595	Whole white alabastrum(diploid) 2	93.928
	CNS0095596	Whole white alabastrum(diploid) 3	108.566
	CNS0095597	Whole white alabastrum(diploid) 4	104.061
	CNS0095598	Silvery flower (diploied) 1	11.580
	CNS0095599	Silvery flower (diploied) 2	15.596
	CNS0095600	Silvery flower (diploied) 3	4.376
	CNS0095601	Golden flower (diploid) 1	8.526
	CNS0095602	Golden flower (diploid) 2	5.041
	CNS0095603	Golden flower (diploid) 3	5.288
	CNS0095604	Slightly white alabastrum(tetraploid) 1	117.823
	CNS0095605	Slightly white alabastrum(tetraploid) 2	118.569
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.625
	CNS0095607	Whole white alabastrum(tetraploid) 1	178.675
	CNS0095608	Whole white alabastrum(tetraploid) 2	167.808
	CNS0095609	Whole white alabastrum(tetraploid) 3	97.869
	CNS0095610	Silvery flower (tetraploid) 1	1.180
	CNS0095611	Silvery flower (tetraploid) 2	4.534
	CNS0095612	Silvery flower (tetraploid) 3	6.035
	CNS0095613	Golden flower (tetraploid) 1	1.009
	CNS0095614	Golden flower (tetraploid) 2	0.884
	CNS0095615	Golden flower (tetraploid) 3	3.096
CRA001975	CRR073297	Stem 1	63.985
	CRR073298	Stem 2	49.762
	CRR073299	Stem 3	53.602
	CRR073300	Leaf 1	54.888
	CRR073301	Leaf 2	48.221
	CRR073302	Leaf 3	49.028
	CRR073303	Juvenile bud 1	40.286
	CRR073304	Juvenile bud 2	28.962
	CRR073305	Juvenile bud 3	17.409
	CRR073306	Third green 1	7.825
	CRR073307	Third green 2	11.751
	CRR073308	Third green 3	11.168
	CRR073309	Second white 1	1.614
	CRR073310	Second white 2	1.649
	CRR073311	Second white 3	2.057
	CRR073312	Silver flowering 1	6.588
	CRR073313	Silver flowering 2	6.030
	CRR073314	Silver flowering 3	2.814
	CRR073315	Gold flowering 1	14.364
	CRR073316	Gold flowering 2	11.439
	CRR073317	Gold flowering 3	14.213
	CRR073318	Tawny withering 1	37.291
	CRR073319	Tawny withering 2	23.261
	CRR073320	Tawny withering 3	35.683