Detail information of GWHGAAZE014970


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002263471.12.6245E-144PREDICTED: NEP1-interacting protein-like 1 [Vitis vinifera]
Swissprottr|Q8GT75|NIP1_ARATH2E-123NEP1-interacting protein 1
trEMBLtr|D7T1R5|D7T1R5_VITVI1E-144Putative uncharacterized protein {ECO:0000313|EMBL:CBI24445.3}
TAIR10AT4G35840.11E-97RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2253075822532824-
GWHAAZE00000004mRNA2253075822532824-
GWHAAZE00000004exon2253075822530880-
GWHAAZE00000004exon2253126422531431-
GWHAAZE00000004exon2253152422531607-
GWHAAZE00000004exon2253194222532120-
GWHAAZE00000004exon2253265922532824-
GWHAAZE00000004CDS2253265922532824-
GWHAAZE00000004CDS2253194222532120-
GWHAAZE00000004CDS2253152422531607-
GWHAAZE00000004CDS2253126422531431-
GWHAAZE00000004CDS2253075822530880-
Transcript Sequence

Network for GWHGAAZE014970

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21942362.70E-10
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf45.453
SRR3591706second leaf18.197
SRR3591707mature leaf28.786
SRR3591708Shoot apex23.334
SRR3591709Stem249.919
SRR3591710White floral bud185.529
SRR3591711White flower312.451
SRR3591712Green floral bud32.165
SRR3591713Yellow flower235.498
SRP173429 SRR8316895Juvenile bud stage 13.181
SRR8316896Juvenile bud stage 20.277
SRR8316897Juvenile bud stage 7.130
SRR8316894Third green stage 7.528
SRR8316900Third green stage 11.158
SRR8316901Third green stage 16.026
SRR8316898Complete white stage 43.577
SRR8316899Complete white stage 24.286
SRR8316903Complete white stage 62.428
SRR8316902Silver flowering stage130.821
SRR8316904Silver flowering stage170.468
SRR8316905Silver flowering stage84.008
SRR8316906Gold flowering stage 250.895
SRR8316907Gold flowering stage 228.289
SRR8316908Gold flowering stage 236.701
SRP132670SRR6706286Control12.475
SRR6706287Light intensity 50%13.920
SRR6706288Light intensity 20%12.882
CNP0000432CNS0095592Slightly white alabastrum(diploid) 121.154
CNS0095593Slightly white alabastrum(diploid) 219.368
CNS0095594Slightly white alabastrum(diploid) 317.838
CNS0095595Whole white alabastrum(diploid) 214.827
CNS0095596Whole white alabastrum(diploid) 316.679
CNS0095597Whole white alabastrum(diploid) 417.192
CNS0095598Silvery flower (diploied) 169.697
CNS0095599Silvery flower (diploied) 268.554
CNS0095600Silvery flower (diploied) 3180.781
CNS0095601Golden flower (diploid) 162.980
CNS0095602Golden flower (diploid) 2107.480
CNS0095603Golden flower (diploid) 3104.570
CNS0095604Slightly white alabastrum(tetraploid) 118.456
CNS0095605Slightly white alabastrum(tetraploid) 214.193
CNS0095606Slightly white alabastrum(tetraploid) 326.050
CNS0095607Whole white alabastrum(tetraploid) 118.343
CNS0095608Whole white alabastrum(tetraploid) 213.653
CNS0095609Whole white alabastrum(tetraploid) 321.518
CNS0095610Silvery flower (tetraploid) 1171.952
CNS0095611Silvery flower (tetraploid) 2213.951
CNS0095612Silvery flower (tetraploid) 3362.016
CNS0095613Golden flower (tetraploid) 1133.670
CNS0095614Golden flower (tetraploid) 2129.314
CNS0095615Golden flower (tetraploid) 3245.514
CRA001975CRR073297Stem 116.910
CRR073298Stem 221.121
CRR073299Stem 321.516
CRR073300Leaf 116.660
CRR073301Leaf 219.756
CRR073302Leaf 315.136
CRR073303Juvenile bud 121.226
CRR073304Juvenile bud 213.007
CRR073305Juvenile bud 313.268
CRR073306Third green 1244.423
CRR073307Third green 2166.370
CRR073308Third green 3172.605
CRR073309Second white 1158.637
CRR073310Second white 2134.919
CRR073311Second white 379.042
CRR073312Silver flowering 173.605
CRR073313Silver flowering 2100.358
CRR073314Silver flowering 378.484
CRR073315Gold flowering 119.692
CRR073316Gold flowering 219.089
CRR073317Gold flowering 321.615
CRR073318Tawny withering 142.978
CRR073319Tawny withering 229.392
CRR073320Tawny withering 356.296