Gene detail

Detail information of GWHGAAZE014971

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009587704.1	7.0494E-161	PREDICTED: probable prolyl 4-hydroxylase 10 [Nicotiana tomentosiformis]
Swissprot	tr\|F4JZ24\|P4H10_ARATH	2E-158	Probable prolyl 4-hydroxylase 10 (Precursor)
trEMBL	tr\|M1C1Z3\|M1C1Z3_SOLTU	2E-159	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400058013}
TAIR10	AT5G66060.1	5E-116	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	22584632	22588067	-
GWHAAZE00000004	mRNA	22584632	22588067	-
GWHAAZE00000004	exon	22584632	22584705	-
GWHAAZE00000004	exon	22584818	22585005	-
GWHAAZE00000004	exon	22585091	22585220	-
GWHAAZE00000004	exon	22586068	22586165	-
GWHAAZE00000004	exon	22586284	22586381	-
GWHAAZE00000004	exon	22587474	22587555	-
GWHAAZE00000004	exon	22587871	22588067	-
GWHAAZE00000004	CDS	22587871	22588067	-
GWHAAZE00000004	CDS	22587474	22587555	-
GWHAAZE00000004	CDS	22586284	22586381	-
GWHAAZE00000004	CDS	22586068	22586165	-
GWHAAZE00000004	CDS	22585091	22585220	-
GWHAAZE00000004	CDS	22584818	22585005	-
GWHAAZE00000004	CDS	22584632	22584705	-

Transcript Sequence
>GWHTAAZE014985 ATGGCTTCAAAAGGCAGGCACTCTCGAGCTCCATCGCGGAGATCAAATTCGTCGACTATTCTCTTCGGTATAATCATCTTGTGCTTCTTACTCATTATCGCCCTTCTCGCTTTCGGGATTCTCTCCATTCCGAACAATTCTGGCAATTCTCCCAAAGCCAATGATCTCAGCTCCATTGTTCACAGTACTGTGGACAGAAATGATGTAATTGAGAGAAGAGATCAGTGGGTTGAAGTAATCTCTTGGGAGCCACGTGCCGTGATTTATCATAATTTCTTGTCTAAGGATGAGTGCGAGTATCTAATCAATCTTGGTAAGCCTCATATGAAAAAATCGACTGTCGTAGATAGTAAAACTGGAAGGAGCACAGATAGTAGGGTACGTACGAGTTCTGGAATGTTTCTGAAAAGAGGACGTGATAAAGTCGTACAAACTATTGAAAAAAGGATTGCAGATTTCACCTTCATACCTGTAGAGCAAGGGGAGGGACTTCAAATTCTCCACTATGAAGTAGGGCAAAAATACGAGCCTCACAATGACTACTTTCTTGATACGTTCAACACAAACAATGGGGGCCAACGCATTGCTACAGTTCTAATGTACCTTTCAGATGTAGAAGAAGGGGGCGAGACAGTATTTCCCAAGGCGAAAGGAAATTTTAGCTCCCTGCCTTGGTGGAACGAACTTTCTGAATGTGGAAGAGGAGGGCTATCAATTAAACCAAAAATGGGCAATGCATTGCTTTTCTGGAACATGAAGCCTGATGCAACTGTAGATCCTTTAAGCTTGCACGGTGGCTGCCCTGTTATTAGGGGGAACAAATGGTCATCTACAAAATGGATGCGTGTTAGCGAATATTTTGTTTAA

Network for GWHGAAZE014971

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13640.7	2OG-FeII_Oxy_3	164	282	2.20E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00472	P4HA	Metabolic pathways	map01100
K00472	P4HA	Arginine and proline metabolism	map00330

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0031418	molecular_function	L-ascorbic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.437
	SRR3591706	second leaf	0.428
	SRR3591707	mature leaf	0.844
	SRR3591708	Shoot apex	1.663
	SRR3591709	Stem	4.056
	SRR3591710	White floral bud	3.680
	SRR3591711	White flower	4.956
	SRR3591712	Green floral bud	18.165
	SRR3591713	Yellow flower	7.334
SRP173429	SRR8316895	Juvenile bud stage	1.585
	SRR8316896	Juvenile bud stage	7.136
	SRR8316897	Juvenile bud stage	4.052
	SRR8316894	Third green stage	3.129
	SRR8316900	Third green stage	13.351
	SRR8316901	Third green stage	14.097
	SRR8316898	Complete white stage	1.573
	SRR8316899	Complete white stage	1.221
	SRR8316903	Complete white stage	4.057
	SRR8316902	Silver flowering stage	3.673
	SRR8316904	Silver flowering stage	6.417
	SRR8316905	Silver flowering stage	3.060
	SRR8316906	Gold flowering stage	13.189
	SRR8316907	Gold flowering stage	9.764
	SRR8316908	Gold flowering stage	6.140
SRP132670	SRR6706286	Control	2.874
	SRR6706287	Light intensity 50%	3.267
	SRR6706288	Light intensity 20%	3.204
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.407
	CNS0095593	Slightly white alabastrum(diploid) 2	11.022
	CNS0095594	Slightly white alabastrum(diploid) 3	13.850
	CNS0095595	Whole white alabastrum(diploid) 2	19.864
	CNS0095596	Whole white alabastrum(diploid) 3	27.545
	CNS0095597	Whole white alabastrum(diploid) 4	17.335
	CNS0095598	Silvery flower (diploied) 1	0.790
	CNS0095599	Silvery flower (diploied) 2	2.266
	CNS0095600	Silvery flower (diploied) 3	3.944
	CNS0095601	Golden flower (diploid) 1	1.415
	CNS0095602	Golden flower (diploid) 2	2.802
	CNS0095603	Golden flower (diploid) 3	1.971
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.888
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.760
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.240
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.137
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.111
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.118
	CNS0095610	Silvery flower (tetraploid) 1	3.049
	CNS0095611	Silvery flower (tetraploid) 2	2.641
	CNS0095612	Silvery flower (tetraploid) 3	13.880
	CNS0095613	Golden flower (tetraploid) 1	5.523
	CNS0095614	Golden flower (tetraploid) 2	3.021
	CNS0095615	Golden flower (tetraploid) 3	4.661
CRA001975	CRR073297	Stem 1	0.812
	CRR073298	Stem 2	2.278
	CRR073299	Stem 3	1.170
	CRR073300	Leaf 1	3.205
	CRR073301	Leaf 2	2.926
	CRR073302	Leaf 3	2.828
	CRR073303	Juvenile bud 1	0.927
	CRR073304	Juvenile bud 2	1.994
	CRR073305	Juvenile bud 3	0.339
	CRR073306	Third green 1	2.318
	CRR073307	Third green 2	2.283
	CRR073308	Third green 3	1.865
	CRR073309	Second white 1	2.992
	CRR073310	Second white 2	4.337
	CRR073311	Second white 3	2.494
	CRR073312	Silver flowering 1	3.535
	CRR073313	Silver flowering 2	3.555
	CRR073314	Silver flowering 3	2.557
	CRR073315	Gold flowering 1	0.360
	CRR073316	Gold flowering 2	0.738
	CRR073317	Gold flowering 3	0.040
	CRR073318	Tawny withering 1	0.716
	CRR073319	Tawny withering 2	0.197
	CRR073320	Tawny withering 3	0.498