Gene detail

Detail information of GWHGAAZE014998

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP12665.1	8.7348E-178	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8LFN2\|Y3037_ARATH	5E-161	Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 (Precursor)
trEMBL	tr\|A0A068UVV9\|A0A068UVV9_COFCA	3E-178	Coffea canephora DH200=94 genomic scaffold, scaffold_69 {ECO:0000313\|EMBL:CDP12665.1}
TAIR10	AT3G03770.2	4E-128	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	23026821	23029427	-
GWHAAZE00000004	mRNA	23026821	23029427	-
GWHAAZE00000004	exon	23026821	23027090	-
GWHAAZE00000004	exon	23027656	23027767	-
GWHAAZE00000004	exon	23027856	23027893	-
GWHAAZE00000004	exon	23027994	23028190	-
GWHAAZE00000004	exon	23028521	23028761	-
GWHAAZE00000004	exon	23028937	23029070	-
GWHAAZE00000004	exon	23029156	23029249	-
GWHAAZE00000004	exon	23029338	23029427	-
GWHAAZE00000004	CDS	23029338	23029427	-
GWHAAZE00000004	CDS	23029156	23029249	-
GWHAAZE00000004	CDS	23028937	23029070	-
GWHAAZE00000004	CDS	23028521	23028761	-
GWHAAZE00000004	CDS	23027994	23028190	-
GWHAAZE00000004	CDS	23027856	23027893	-
GWHAAZE00000004	CDS	23027656	23027767	-
GWHAAZE00000004	CDS	23026821	23027090	-

Transcript Sequence
>GWHTAAZE015012 ATGAAGATGGAAGTCAACATCGACTTGCCTATTGTCGCAACGAGGCTTTGGCTGTGGGAGTCCTACCCAGTCACCACAAGTCCAAAACGGAGTTCGTGGGGAGAAAATGGTGAAAAACCTCCGGCAAGATTAATAGCAGAGAATGCATCAACTGGGTATACCTCAAAGCTTCTTTCAGATGCAAGGTATATAACTCAAGCGATGAAACGAGGAGCACTTGGGCTTCCGGCTTATAGAACCTTTTCATTGGAAGAACTTGAGGGGGCAACAAGTAATTTTGACACATCAACCTTCATGGGAGAAGGATCTCATGGTCAAATGTACAGAGGTCAGCTGAAGGATGGTTCCCTCGTGGTTATTAGATGCCTGAAAATGAAAAGAAGCCACAACACTCGAAGTTTTATGCACCACATAGAACTGATTTCTAAACTCAGGCATCAGAATTTGGTCAGCACTATTGGACACTGCTTTGAATGTTACTTGGATGATTCAAGTGTCAGCAGAATATTTCTCGTCTTTGAATATGTGCCGAATGGCACTCTTAGGGATGCAATTTCAGGGAGGCGAGCGTTAACATGGAGTCAACGCATAGCAGCTGCTATAGGAATAGCAAAGGGTATCCAATTCCTTCATACGGGAATTGTGCCTGGTGTATTTCCAAACAATTTGAAAATAACAGATGTTTTGTTGGATCAGAACCTTGCTGCTAAAATTAGCAGTTACAACCTTCCTTTGTTAACGGAAAATTTGGGAAAGATTTCTTCCGGTGCATCCGCAAAACTTAATAATGCAAGTATTAAACACCCGGAAAAGTCTGACGTTTATGACTTGGGAGTAATATTATTTGAAATGATTGTGGGGAGGCCATTCAATACTCGGACTGAAGTAGAATTTATAAAAGATCAGCTACAAGCATGCATAATGGCAGAGAGTGTGGCCCGAAAGAGCATGAGCGTGGTTGATCCAGCGGTTCGAGACGCATGCTCTGATGAATCATTGAAGACAATGATGGAAATATGCAGCAGGTGTTTGCTTAATAATCCTGCAGATAGACCTTCTCTTGAGGATGTTCTTTGGAACTTGCAATTTGCTGCCCAGGTTCAGGACGCCTGCCAGAGCAGCGATGGGTCCCCACTCTCGCCTACGCTTACGCCTAAATCTTCAATAGTTTCTTAG

Network for GWHGAAZE014998

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	98	358	2.80E-23

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.490
	SRR3591706	second leaf	22.564
	SRR3591707	mature leaf	24.110
	SRR3591708	Shoot apex	22.809
	SRR3591709	Stem	56.216
	SRR3591710	White floral bud	20.466
	SRR3591711	White flower	9.612
	SRR3591712	Green floral bud	15.217
	SRR3591713	Yellow flower	1.971
SRP173429	SRR8316895	Juvenile bud stage	8.676
	SRR8316896	Juvenile bud stage	14.124
	SRR8316897	Juvenile bud stage	6.108
	SRR8316894	Third green stage	9.278
	SRR8316900	Third green stage	26.045
	SRR8316901	Third green stage	25.672
	SRR8316898	Complete white stage	11.391
	SRR8316899	Complete white stage	29.265
	SRR8316903	Complete white stage	22.797
	SRR8316902	Silver flowering stage	4.826
	SRR8316904	Silver flowering stage	5.365
	SRR8316905	Silver flowering stage	2.789
	SRR8316906	Gold flowering stage	4.415
	SRR8316907	Gold flowering stage	3.624
	SRR8316908	Gold flowering stage	3.759
SRP132670	SRR6706286	Control	12.157
	SRR6706287	Light intensity 50%	14.067
	SRR6706288	Light intensity 20%	13.976
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.805
	CNS0095593	Slightly white alabastrum(diploid) 2	22.393
	CNS0095594	Slightly white alabastrum(diploid) 3	10.954
	CNS0095595	Whole white alabastrum(diploid) 2	14.976
	CNS0095596	Whole white alabastrum(diploid) 3	7.036
	CNS0095597	Whole white alabastrum(diploid) 4	11.970
	CNS0095598	Silvery flower (diploied) 1	15.584
	CNS0095599	Silvery flower (diploied) 2	17.741
	CNS0095600	Silvery flower (diploied) 3	9.334
	CNS0095601	Golden flower (diploid) 1	12.515
	CNS0095602	Golden flower (diploid) 2	6.157
	CNS0095603	Golden flower (diploid) 3	7.632
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.062
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.648
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.420
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.868
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.081
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.620
	CNS0095610	Silvery flower (tetraploid) 1	6.758
	CNS0095611	Silvery flower (tetraploid) 2	7.643
	CNS0095612	Silvery flower (tetraploid) 3	6.558
	CNS0095613	Golden flower (tetraploid) 1	2.262
	CNS0095614	Golden flower (tetraploid) 2	3.160
	CNS0095615	Golden flower (tetraploid) 3	0.856
CRA001975	CRR073297	Stem 1	20.045
	CRR073298	Stem 2	19.401
	CRR073299	Stem 3	12.488
	CRR073300	Leaf 1	32.447
	CRR073301	Leaf 2	32.518
	CRR073302	Leaf 3	18.799
	CRR073303	Juvenile bud 1	17.838
	CRR073304	Juvenile bud 2	14.578
	CRR073305	Juvenile bud 3	29.357
	CRR073306	Third green 1	5.007
	CRR073307	Third green 2	3.826
	CRR073308	Third green 3	6.544
	CRR073309	Second white 1	1.785
	CRR073310	Second white 2	1.033
	CRR073311	Second white 3	0.813
	CRR073312	Silver flowering 1	0.132
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.520
	CRR073315	Gold flowering 1	12.592
	CRR073316	Gold flowering 2	18.223
	CRR073317	Gold flowering 3	9.260
	CRR073318	Tawny withering 1	11.684
	CRR073319	Tawny withering 2	16.107
	CRR073320	Tawny withering 3	13.035