Gene detail

Detail information of GWHGAAZE015007

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFY08285.1	6.1621E-121	class II chitinase [Acacia koa]
Swissprot	tr\|P36907\|CHIX_PEA	2E-113	Endochitinase (Precursor)
trEMBL	tr\|K9MXB3\|K9MXB3_9FABA	2E-121	Class II chitinase {ECO:0000313\|EMBL:AFY08285.1}
TAIR10	AT3G12500.1	2E-84	basic chitinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	23141831	23143332	-
GWHAAZE00000004	mRNA	23141831	23143332	-
GWHAAZE00000004	exon	23141831	23142203	-
GWHAAZE00000004	exon	23142349	23142460	-
GWHAAZE00000004	exon	23143071	23143332	-
GWHAAZE00000004	CDS	23143071	23143332	-
GWHAAZE00000004	CDS	23142349	23142460	-
GWHAAZE00000004	CDS	23141831	23142203	-

Transcript Sequence
>GWHTAAZE015021 ATGAAGTTTCTTGTAGTAATTTTGTTCACTTTGTTCTCTTCAATATTGGGGGGCGATGTAAGCTCACTGATAAGCCCCACTATGTTCAATGAAATGCTTAAACATAGGAACGATGATGACTGCCAAGTCAAGGGGTTCTACACTTACGAATCTTTTATAAATGCCGCACGATCTTTCAACGCTTTTGGCACCACCGGCGACGATAGCACTCGTAAAAGAGAGCTCGCTGCTTTCTTCGGCCAAACGTCTCACGCAACCACCGGTGGGTGGGAAAGTGCACCAGATGGTCCATTTGCATGGGGATATTGCTTCGTTAGGGAAGGAGACCAATCAGGTGCTGGTTACTATGGCAGAGGACCCATTCAACTCACGCACGAGAACAACTATGAACAAGCAGGTAGAGTAATCGGAGCAGACCTTGCAAACAATCCTGATCTAGTAGCCACGGATCCCACCATATCTTTCAAGACGGCCATATGGTTCTGGATGACACCACAAAAGAACAAGCCATCGAGCCACGATGTCATCACTGGAAGATGGAGGCCATCGCCAGTGGACCAGTCTGCTGGCCGGCTCCCCGGCTATGGTGTCATCACCAACATTATCAACGGCGGGATCGAGTGCGGCAAAGTTAGTCCCGACGGTAGGGACATTGATCGAATCGGGTTCTACAAGAGGTATTGTGACCTTTTTGGCCTGGAATATGGGACCAATTTGGGCTGCGAAAATCAAAAGTCTTTTGCCTAA

Network for GWHGAAZE015007

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00182.20	Glyco_hydro_19	23	241	1.40E-108

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K20547	CHIB	Metabolic pathways	map01100
		Amino sugar and nucleotide sugar metabolism	map00520
		MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0006032	biological_process	chitin catabolic process
GO:0016998	biological_process	cell wall macromolecule catabolic process
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004568	molecular_function	chitinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.280
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	45.082
	SRR3591709	Stem	1.528
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.280
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.058
SRP173429	SRR8316895	Juvenile bud stage	0.724
	SRR8316896	Juvenile bud stage	0.748
	SRR8316897	Juvenile bud stage	1.482
	SRR8316894	Third green stage	0.180
	SRR8316900	Third green stage	0.219
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.772
	SRR8316899	Complete white stage	0.849
	SRR8316903	Complete white stage	0.264
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.007
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	1.142
	SRR6706287	Light intensity 50%	0.831
	SRR6706288	Light intensity 20%	0.429
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.685
	CNS0095593	Slightly white alabastrum(diploid) 2	2.858
	CNS0095594	Slightly white alabastrum(diploid) 3	1.641
	CNS0095595	Whole white alabastrum(diploid) 2	0.316
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.658
	CNS0095598	Silvery flower (diploied) 1	2.582
	CNS0095599	Silvery flower (diploied) 2	4.508
	CNS0095600	Silvery flower (diploied) 3	0.541
	CNS0095601	Golden flower (diploid) 1	1.766
	CNS0095602	Golden flower (diploid) 2	0.195
	CNS0095603	Golden flower (diploid) 3	0.202
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.190
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.840
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.155
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.733
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.000
	CNS0095610	Silvery flower (tetraploid) 1	15.282
	CNS0095611	Silvery flower (tetraploid) 2	3.091
	CNS0095612	Silvery flower (tetraploid) 3	0.842
	CNS0095613	Golden flower (tetraploid) 1	0.037
	CNS0095614	Golden flower (tetraploid) 2	8.908
	CNS0095615	Golden flower (tetraploid) 3	0.395
CRA001975	CRR073297	Stem 1	1.054
	CRR073298	Stem 2	2.119
	CRR073299	Stem 3	3.802
	CRR073300	Leaf 1	0.073
	CRR073301	Leaf 2	0.126
	CRR073302	Leaf 3	0.089
	CRR073303	Juvenile bud 1	0.405
	CRR073304	Juvenile bud 2	0.723
	CRR073305	Juvenile bud 3	0.223
	CRR073306	Third green 1	0.532
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.154
	CRR073309	Second white 1	0.025
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.010
	CRR073316	Gold flowering 2	0.281
	CRR073317	Gold flowering 3	0.040
	CRR073318	Tawny withering 1	0.009
	CRR073319	Tawny withering 2	0.112
	CRR073320	Tawny withering 3	0.000