Detail information of GWHGAAZE015013


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002528761.11.86446E-16isocitrate dehydrogenase, putative [Ricinus communis]
Swissprottr|O81796|IDH3_ARATH5E-14Isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial (Precursor)
trEMBLtr|B9SRZ2|B9SRZ2_RICCO7E-17Isocitrate dehydrogenase, putative {ECO:0000313|EMBL:EEF33583.1}
TAIR10AT4G35650.17E-12isocitrate dehydrogenase III

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2326097123261162-
GWHAAZE00000004mRNA2326097123261162-
GWHAAZE00000004exon2326097123261162-
GWHAAZE00000004CDS2326097123261162-
Transcript Sequence

Network for GWHGAAZE015013

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00030IDH3 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cyclemap00020

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.298
SRR3591706second leaf7.752
SRR3591707mature leaf3.716
SRR3591708Shoot apex4.038
SRR3591709Stem10.249
SRR3591710White floral bud29.924
SRR3591711White flower20.806
SRR3591712Green floral bud42.421
SRR3591713Yellow flower11.917
SRP173429 SRR8316895Juvenile bud stage 21.430
SRR8316896Juvenile bud stage 46.905
SRR8316897Juvenile bud stage 15.108
SRR8316894Third green stage 17.410
SRR8316900Third green stage 75.230
SRR8316901Third green stage 60.828
SRR8316898Complete white stage 21.806
SRR8316899Complete white stage 26.811
SRR8316903Complete white stage 29.055
SRR8316902Silver flowering stage19.045
SRR8316904Silver flowering stage29.343
SRR8316905Silver flowering stage10.564
SRR8316906Gold flowering stage 26.231
SRR8316907Gold flowering stage 28.880
SRR8316908Gold flowering stage 24.805
SRP132670SRR6706286Control69.961
SRR6706287Light intensity 50%65.406
SRR6706288Light intensity 20%67.163
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.714
CNS0095593Slightly white alabastrum(diploid) 215.533
CNS0095594Slightly white alabastrum(diploid) 320.556
CNS0095595Whole white alabastrum(diploid) 221.049
CNS0095596Whole white alabastrum(diploid) 326.327
CNS0095597Whole white alabastrum(diploid) 417.504
CNS0095598Silvery flower (diploied) 16.444
CNS0095599Silvery flower (diploied) 25.099
CNS0095600Silvery flower (diploied) 331.732
CNS0095601Golden flower (diploid) 13.992
CNS0095602Golden flower (diploid) 219.985
CNS0095603Golden flower (diploid) 319.753
CNS0095604Slightly white alabastrum(tetraploid) 141.898
CNS0095605Slightly white alabastrum(tetraploid) 229.199
CNS0095606Slightly white alabastrum(tetraploid) 330.563
CNS0095607Whole white alabastrum(tetraploid) 134.803
CNS0095608Whole white alabastrum(tetraploid) 249.713
CNS0095609Whole white alabastrum(tetraploid) 378.284
CNS0095610Silvery flower (tetraploid) 131.497
CNS0095611Silvery flower (tetraploid) 233.791
CNS0095612Silvery flower (tetraploid) 348.295
CNS0095613Golden flower (tetraploid) 113.590
CNS0095614Golden flower (tetraploid) 227.742
CNS0095615Golden flower (tetraploid) 315.229
CRA001975CRR073297Stem 121.823
CRR073298Stem 223.594
CRR073299Stem 325.092
CRR073300Leaf 130.248
CRR073301Leaf 236.754
CRR073302Leaf 340.466
CRR073303Juvenile bud 152.717
CRR073304Juvenile bud 251.331
CRR073305Juvenile bud 332.546
CRR073306Third green 150.558
CRR073307Third green 247.553
CRR073308Third green 337.064
CRR073309Second white 136.188
CRR073310Second white 232.384
CRR073311Second white 332.536
CRR073312Silver flowering 134.301
CRR073313Silver flowering 236.093
CRR073314Silver flowering 331.613
CRR073315Gold flowering 111.763
CRR073316Gold flowering 212.481
CRR073317Gold flowering 36.330
CRR073318Tawny withering 121.508
CRR073319Tawny withering 220.207
CRR073320Tawny withering 321.935