Gene detail

Detail information of GWHGAAZE015038

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004232569.1	1.8577E-135	PREDICTED: WUSCHEL-related homeobox 8 [Solanum lycopersicum]
Swissprot	tr\|Q5QMM3\|WOX8_ORYSJ	3E-81	WUSCHEL-related homeobox 8
trEMBL	tr\|K4BAD7\|K4BAD7_SOLLC	7E-136	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc02g082670.2.1}
TAIR10	AT4G35550.1	1E-63	WUSCHEL related homeobox 13

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	23698472	23702028	+
GWHAAZE00000004	mRNA	23698472	23702028	+
GWHAAZE00000004	exon	23698472	23698676	+
GWHAAZE00000004	exon	23700058	23700591	+
GWHAAZE00000004	exon	23701943	23702028	+
GWHAAZE00000004	CDS	23698472	23698676	+
GWHAAZE00000004	CDS	23700058	23700591	+
GWHAAZE00000004	CDS	23701943	23702028	+

Transcript Sequence
>GWHTAAZE015052 ATGGATTGGGATCAACAACAACAACAACAACAACAGCAGCAGCAGCAGCAAGAAGAAGTGAGCAATGGAAGCATGTTCGTAAAGGTAATGACCGACGAGCAAATGGAAATCCTCCGCAATCAAATCGCCGCTTACGCCACCATTTGCCAACAACTCGTCGATTTGCACAAAAAATCCCTCTCTTCTCCTCACCACGATCTTACAGGAATCAGGCTGGGAAATCTCTATTGTGACCCCTTAGTTACATCTGCTGGTCACAAAATTAGTGGCAGACAACGATGGACCCCAACGCCCGTTCAGCTCCAGATTCTTGAGCGCATTTTCGAGCAAGGAAATGGGACTCCAAGCAAGCAAAAAATCAAAGAAATAACCTCTGATTTGTCTCAGCATGGCCAAATTTCAGAGACAAATGTTTATAATTGGTTCCAAAACAGGCGTGCTCGTTCTAAAAGAAAGCAACAGGTTTCATCAGCACCAAACAATGCCGAATCCGAAGTGGAGACAGAAGTTGAATCACCCAATGAAAAAAAGACCAAGTCCGAGGATTACCAGTCCCAGCAGAATTCAGTTCCCATGGCAGAGGATTTGTGCTTCCAAACACCGGAGGTGAGCTCTGGGATGCAGCCTACTGATCCCCGGTCTAATAAAGTGGAGCCGATGTTTCCATCCGATGCTGGATCAAAGCCTGCGGGTAATTTAAGCCAAATGTCTTTCTATGGAAGTATGTTATCGAACCCAAGAATGGATCAAATGATCGGAAAGATGGAAGTGCCTGGGGTCTATAATTCGTATCTGCACGAAGATGACTACAACATGACTAGTTGA

Network for GWHGAAZE015038

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.30	Homeodomain	91	151	1.90E-18

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-WOX

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	46.949
	SRR3591706	second leaf	25.913
	SRR3591707	mature leaf	23.172
	SRR3591708	Shoot apex	14.097
	SRR3591709	Stem	59.833
	SRR3591710	White floral bud	5.523
	SRR3591711	White flower	7.702
	SRR3591712	Green floral bud	3.052
	SRR3591713	Yellow flower	1.221
SRP173429	SRR8316895	Juvenile bud stage	5.225
	SRR8316896	Juvenile bud stage	5.312
	SRR8316897	Juvenile bud stage	2.058
	SRR8316894	Third green stage	1.678
	SRR8316900	Third green stage	4.350
	SRR8316901	Third green stage	4.701
	SRR8316898	Complete white stage	4.951
	SRR8316899	Complete white stage	13.991
	SRR8316903	Complete white stage	6.852
	SRR8316902	Silver flowering stage	1.056
	SRR8316904	Silver flowering stage	1.457
	SRR8316905	Silver flowering stage	0.910
	SRR8316906	Gold flowering stage	1.822
	SRR8316907	Gold flowering stage	2.443
	SRR8316908	Gold flowering stage	2.644
SRP132670	SRR6706286	Control	7.912
	SRR6706287	Light intensity 50%	7.915
	SRR6706288	Light intensity 20%	6.106
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.467
	CNS0095593	Slightly white alabastrum(diploid) 2	9.136
	CNS0095594	Slightly white alabastrum(diploid) 3	4.566
	CNS0095595	Whole white alabastrum(diploid) 2	3.992
	CNS0095596	Whole white alabastrum(diploid) 3	1.986
	CNS0095597	Whole white alabastrum(diploid) 4	2.882
	CNS0095598	Silvery flower (diploied) 1	9.163
	CNS0095599	Silvery flower (diploied) 2	12.389
	CNS0095600	Silvery flower (diploied) 3	6.117
	CNS0095601	Golden flower (diploid) 1	15.167
	CNS0095602	Golden flower (diploid) 2	9.369
	CNS0095603	Golden flower (diploid) 3	11.409
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.349
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.143
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.040
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.937
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.846
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.355
	CNS0095610	Silvery flower (tetraploid) 1	0.306
	CNS0095611	Silvery flower (tetraploid) 2	1.488
	CNS0095612	Silvery flower (tetraploid) 3	1.537
	CNS0095613	Golden flower (tetraploid) 1	0.484
	CNS0095614	Golden flower (tetraploid) 2	1.347
	CNS0095615	Golden flower (tetraploid) 3	0.434
CRA001975	CRR073297	Stem 1	14.357
	CRR073298	Stem 2	13.506
	CRR073299	Stem 3	10.590
	CRR073300	Leaf 1	13.736
	CRR073301	Leaf 2	16.662
	CRR073302	Leaf 3	8.951
	CRR073303	Juvenile bud 1	9.837
	CRR073304	Juvenile bud 2	5.595
	CRR073305	Juvenile bud 3	13.605
	CRR073306	Third green 1	2.701
	CRR073307	Third green 2	4.049
	CRR073308	Third green 3	4.381
	CRR073309	Second white 1	0.197
	CRR073310	Second white 2	0.802
	CRR073311	Second white 3	0.230
	CRR073312	Silver flowering 1	0.236
	CRR073313	Silver flowering 2	0.255
	CRR073314	Silver flowering 3	1.434
	CRR073315	Gold flowering 1	46.396
	CRR073316	Gold flowering 2	65.495
	CRR073317	Gold flowering 3	40.883
	CRR073318	Tawny withering 1	179.975
	CRR073319	Tawny withering 2	164.430
	CRR073320	Tawny withering 3	178.947