Detail information of GWHGAAZE015053


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002276539.12.07499E-65PREDICTED: RING-H2 finger protein ATL80 [Vitis vinifera]
Swissprottr|Q9LM69|ATL80_ARATH1E-58RING-H2 finger protein ATL80
trEMBLtr|D7SWC6|D7SWC6_VITVI8E-66Putative uncharacterized protein {ECO:0000313|EMBL:CBI21575.3}
TAIR10AT1G20823.14E-44RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2393803823938484+
GWHAAZE00000004mRNA2393803823938484+
GWHAAZE00000004exon2393803823938484+
GWHAAZE00000004CDS2393803823938484+
Transcript Sequence

Network for GWHGAAZE015053

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21061495.50E-15
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf26.839
SRR3591706second leaf33.681
SRR3591707mature leaf27.686
SRR3591708Shoot apex18.271
SRR3591709Stem31.920
SRR3591710White floral bud13.933
SRR3591711White flower17.763
SRR3591712Green floral bud8.107
SRR3591713Yellow flower15.185
SRP173429 SRR8316895Juvenile bud stage 4.382
SRR8316896Juvenile bud stage 4.684
SRR8316897Juvenile bud stage 1.377
SRR8316894Third green stage 3.496
SRR8316900Third green stage 8.249
SRR8316901Third green stage 11.347
SRR8316898Complete white stage 6.657
SRR8316899Complete white stage 21.181
SRR8316903Complete white stage 16.801
SRR8316902Silver flowering stage15.343
SRR8316904Silver flowering stage11.132
SRR8316905Silver flowering stage8.857
SRR8316906Gold flowering stage 31.452
SRR8316907Gold flowering stage 32.105
SRR8316908Gold flowering stage 34.545
SRP132670SRR6706286Control12.418
SRR6706287Light intensity 50%11.177
SRR6706288Light intensity 20%11.886
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.932
CNS0095593Slightly white alabastrum(diploid) 213.243
CNS0095594Slightly white alabastrum(diploid) 312.073
CNS0095595Whole white alabastrum(diploid) 26.026
CNS0095596Whole white alabastrum(diploid) 37.889
CNS0095597Whole white alabastrum(diploid) 411.256
CNS0095598Silvery flower (diploied) 129.540
CNS0095599Silvery flower (diploied) 228.062
CNS0095600Silvery flower (diploied) 331.953
CNS0095601Golden flower (diploid) 140.706
CNS0095602Golden flower (diploid) 247.598
CNS0095603Golden flower (diploid) 345.573
CNS0095604Slightly white alabastrum(tetraploid) 114.404
CNS0095605Slightly white alabastrum(tetraploid) 213.958
CNS0095606Slightly white alabastrum(tetraploid) 323.097
CNS0095607Whole white alabastrum(tetraploid) 115.301
CNS0095608Whole white alabastrum(tetraploid) 25.633
CNS0095609Whole white alabastrum(tetraploid) 39.326
CNS0095610Silvery flower (tetraploid) 122.599
CNS0095611Silvery flower (tetraploid) 219.054
CNS0095612Silvery flower (tetraploid) 35.685
CNS0095613Golden flower (tetraploid) 114.553
CNS0095614Golden flower (tetraploid) 224.820
CNS0095615Golden flower (tetraploid) 316.719
CRA001975CRR073297Stem 131.656
CRR073298Stem 226.098
CRR073299Stem 356.066
CRR073300Leaf 126.397
CRR073301Leaf 227.876
CRR073302Leaf 351.028
CRR073303Juvenile bud 135.293
CRR073304Juvenile bud 230.703
CRR073305Juvenile bud 326.085
CRR073306Third green 19.318
CRR073307Third green 213.943
CRR073308Third green 39.732
CRR073309Second white 116.725
CRR073310Second white 211.549
CRR073311Second white 39.143
CRR073312Silver flowering 133.714
CRR073313Silver flowering 277.775
CRR073314Silver flowering 367.381
CRR073315Gold flowering 124.249
CRR073316Gold flowering 233.152
CRR073317Gold flowering 330.225
CRR073318Tawny withering 1102.984
CRR073319Tawny withering 2114.795
CRR073320Tawny withering 3127.924