Gene detail

Detail information of GWHGAAZE015058

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011088180.1	0	PREDICTED: WD repeat-containing protein 55 homolog [Sesamum indicum]
Swissprot	tr\|Q8W117\|SMU1_ARATH	0.000005	Suppressor of mec-8 and unc-52 protein homolog 1
trEMBL	tr\|G7JRY6\|G7JRY6_MEDTR	0	Transducin/WD-40 repeat protein {ECO:0000313\|EMBL:AES91283.1}
TAIR10	AT2G34260.1	4E-122	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	24000729	24006768	+
GWHAAZE00000004	mRNA	24000729	24006768	+
GWHAAZE00000004	exon	24000729	24000838	+
GWHAAZE00000004	exon	24000974	24001006	+
GWHAAZE00000004	exon	24001769	24001833	+
GWHAAZE00000004	exon	24001951	24002038	+
GWHAAZE00000004	exon	24002129	24002201	+
GWHAAZE00000004	exon	24003594	24003700	+
GWHAAZE00000004	exon	24004380	24004422	+
GWHAAZE00000004	exon	24004543	24004599	+
GWHAAZE00000004	exon	24005165	24005241	+
GWHAAZE00000004	exon	24005353	24005401	+
GWHAAZE00000004	exon	24005482	24005528	+
GWHAAZE00000004	exon	24005629	24005702	+
GWHAAZE00000004	exon	24006020	24006075	+
GWHAAZE00000004	exon	24006168	24006294	+
GWHAAZE00000004	exon	24006698	24006768	+
GWHAAZE00000004	CDS	24000729	24000838	+
GWHAAZE00000004	CDS	24000974	24001006	+
GWHAAZE00000004	CDS	24001769	24001833	+
GWHAAZE00000004	CDS	24001951	24002038	+
GWHAAZE00000004	CDS	24002129	24002201	+
GWHAAZE00000004	CDS	24003594	24003700	+
GWHAAZE00000004	CDS	24004380	24004422	+
GWHAAZE00000004	CDS	24004543	24004599	+
GWHAAZE00000004	CDS	24005165	24005241	+
GWHAAZE00000004	CDS	24005353	24005401	+
GWHAAZE00000004	CDS	24005482	24005528	+
GWHAAZE00000004	CDS	24005629	24005702	+
GWHAAZE00000004	CDS	24006020	24006075	+
GWHAAZE00000004	CDS	24006168	24006294	+
GWHAAZE00000004	CDS	24006698	24006768	+

Transcript Sequence
>GWHTAAZE015072 ATGGTGCAGTTTGCTATGGAAATAGGTTTTGTGGACGAAATATTTGATTTCGATTTTCATCCTTCGAACCAATTGGTAGCTTCTGGGCTTATCAATGGCGACCTTCTTCTATATCGATACGCCAACGATTCGCCACCACAAAGGTTGTTGGAAGTAAAAGCCCATACCGAATCATGTAGAGCAGTTCGGTTCATCAACGAAGGACGAGCCATTCTCACTGGTTCCCCGGATTGCTCTATTCTGGCGACTGATGTTGAGACGGGTTCTACTGTTGTTCGTCTTGAAAATGCTCATGAGGCTGCTGTCAATCGGTTAGTTAACTTGACTGGTTCAACCATTGCCTCTGGGGATGATGCAGGGTGTATTAAGGTATGGGATACAAGACAACGCTCTTGCTGCAATTCGTTTGATGCTCATGAAGAGTACATTTCAGATATAACTTATGCCCCTGATGCCATGAAACTGTTGGGAACAAGTGGAGATGGAACTCTTTCTGTTTGCAATCTTCGAAGAAACAAGGTTCAGACTCGGTCCGAGTTTTCTGAAGATGAGCTGCTTTCTGTAGTGATTATGAAGAATGGTCGGAAAGTTATATGTAGTACAGAAAGTGGGGCTCTACTATTGTATTCATGGGGTTGTTTCAAGGATTGCAGTGATCGCTTTGTTGATCTTGCTACAAACTCCGTTGATGCCTTACTGAAGCTTGATGAAGAAAGGGTCATTACTGGGTCGGAGAACGGTCTCATCAGTCTGGTGGGTATATTGCCCAATAGAATAATCCAGCCAATCGCAGAGCACTCCGAGCTACCCGTTGAACGTCTTGGTTTTTCATATGATAGAAAGTATCTTGGCAGTATGTCACATGATAAGTTGTTGAAGATGTGGGATTTGGAAGATTTAGTGCAAGGTTCTGGAAATACGGAAAATAGCCGTTCAGCAGTGGCAGATAGCGACAGTGATAGTGACAGGATGGACATGGATGATAATATTCCAAAACCATCCAAAGGGACGAAGACGAAAAATAGAAGCACGCATCAAGCTCTTAGCAGTTCCAATGGTTTCTTTGCAGATTTGTAG

Network for GWHGAAZE015058

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.969
	SRR3591706	second leaf	6.553
	SRR3591707	mature leaf	8.369
	SRR3591708	Shoot apex	16.295
	SRR3591709	Stem	11.498
	SRR3591710	White floral bud	11.496
	SRR3591711	White flower	26.586
	SRR3591712	Green floral bud	15.678
	SRR3591713	Yellow flower	19.973
SRP173429	SRR8316895	Juvenile bud stage	24.370
	SRR8316896	Juvenile bud stage	29.575
	SRR8316897	Juvenile bud stage	14.295
	SRR8316894	Third green stage	9.483
	SRR8316900	Third green stage	27.977
	SRR8316901	Third green stage	27.136
	SRR8316898	Complete white stage	5.236
	SRR8316899	Complete white stage	32.200
	SRR8316903	Complete white stage	7.597
	SRR8316902	Silver flowering stage	11.994
	SRR8316904	Silver flowering stage	11.983
	SRR8316905	Silver flowering stage	5.520
	SRR8316906	Gold flowering stage	19.486
	SRR8316907	Gold flowering stage	17.630
	SRR8316908	Gold flowering stage	23.725
SRP132670	SRR6706286	Control	17.211
	SRR6706287	Light intensity 50%	15.848
	SRR6706288	Light intensity 20%	20.274
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.510
	CNS0095593	Slightly white alabastrum(diploid) 2	25.847
	CNS0095594	Slightly white alabastrum(diploid) 3	28.772
	CNS0095595	Whole white alabastrum(diploid) 2	26.451
	CNS0095596	Whole white alabastrum(diploid) 3	25.843
	CNS0095597	Whole white alabastrum(diploid) 4	21.073
	CNS0095598	Silvery flower (diploied) 1	24.008
	CNS0095599	Silvery flower (diploied) 2	20.426
	CNS0095600	Silvery flower (diploied) 3	18.439
	CNS0095601	Golden flower (diploid) 1	15.326
	CNS0095602	Golden flower (diploid) 2	16.224
	CNS0095603	Golden flower (diploid) 3	13.933
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.928
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.723
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.674
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.765
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.579
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.848
	CNS0095610	Silvery flower (tetraploid) 1	26.007
	CNS0095611	Silvery flower (tetraploid) 2	26.822
	CNS0095612	Silvery flower (tetraploid) 3	17.371
	CNS0095613	Golden flower (tetraploid) 1	17.174
	CNS0095614	Golden flower (tetraploid) 2	20.343
	CNS0095615	Golden flower (tetraploid) 3	10.849
CRA001975	CRR073297	Stem 1	25.173
	CRR073298	Stem 2	22.021
	CRR073299	Stem 3	20.975
	CRR073300	Leaf 1	20.183
	CRR073301	Leaf 2	18.424
	CRR073302	Leaf 3	20.090
	CRR073303	Juvenile bud 1	27.479
	CRR073304	Juvenile bud 2	16.987
	CRR073305	Juvenile bud 3	22.037
	CRR073306	Third green 1	1.506
	CRR073307	Third green 2	3.713
	CRR073308	Third green 3	2.675
	CRR073309	Second white 1	12.128
	CRR073310	Second white 2	9.566
	CRR073311	Second white 3	10.644
	CRR073312	Silver flowering 1	7.463
	CRR073313	Silver flowering 2	7.462
	CRR073314	Silver flowering 3	6.284
	CRR073315	Gold flowering 1	13.796
	CRR073316	Gold flowering 2	16.025
	CRR073317	Gold flowering 3	12.383
	CRR073318	Tawny withering 1	25.910
	CRR073319	Tawny withering 2	24.318
	CRR073320	Tawny withering 3	28.124