Detail information of GWHGAAZE015066


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrACV65036.103-hydroxy-3-methylglutaryl coenzyme A reductase [Panax quinquefolius]
Swissprottr|P48020|HMDH1_SOLTU03-hydroxy-3-methylglutaryl-coenzyme A reductase 1
trEMBLtr|D3U313|D3U313_PANQU03-hydroxy-3-methylglutaryl coenzyme A reductase {ECO:0000256|RuleBase:RU361219}
TAIR10AT1G76490.10hydroxy methylglutaryl CoA reductase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2430867024314824+
GWHAAZE00000004mRNA2430867024314824+
GWHAAZE00000004exon2430867024309679+
GWHAAZE00000004exon2431123924311420+
GWHAAZE00000004exon2431203824312384+
GWHAAZE00000004exon2431457924314824+
GWHAAZE00000004CDS2430867024309679+
GWHAAZE00000004CDS2431123924311420+
GWHAAZE00000004CDS2431203824312384+
GWHAAZE00000004CDS2431457924314824+
Transcript Sequence

Network for GWHGAAZE015066

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00368.19HMG-CoA_red2075833.70E-141
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00021HMGCR Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Terpenoid backbone biosynthesismap00900
AMPK signaling pathwaymap04152
Bile secretionmap04976

Gene Ontology

GO term OntologyName
GO:0008299biological_processisoprenoid biosynthetic process
GO:0015936biological_processcoenzyme A metabolic process
GO:0055114biological_processoxidation-reduction process
GO:0004420molecular_functionhydroxymethylglutaryl-CoA reductase (NADPH) activity
GO:0005515molecular_functionprotein binding
GO:0050662molecular_functioncoenzyme binding
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.158
SRR3591706second leaf0.160
SRR3591707mature leaf0.047
SRR3591708Shoot apex0.160
SRR3591709Stem0.339
SRR3591710White floral bud162.874
SRR3591711White flower449.899
SRR3591712Green floral bud2.431
SRR3591713Yellow flower311.466
SRP173429 SRR8316895Juvenile bud stage 0.992
SRR8316896Juvenile bud stage 2.079
SRR8316897Juvenile bud stage 0.413
SRR8316894Third green stage 2.205
SRR8316900Third green stage 2.602
SRR8316901Third green stage 4.079
SRR8316898Complete white stage 7.252
SRR8316899Complete white stage 5.815
SRR8316903Complete white stage 12.234
SRR8316902Silver flowering stage366.297
SRR8316904Silver flowering stage570.199
SRR8316905Silver flowering stage342.348
SRR8316906Gold flowering stage 1616.243
SRR8316907Gold flowering stage 1544.358
SRR8316908Gold flowering stage 1771.283
SRP132670SRR6706286Control7.193
SRR6706287Light intensity 50%7.894
SRR6706288Light intensity 20%5.980
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.109
CNS0095593Slightly white alabastrum(diploid) 21.479
CNS0095594Slightly white alabastrum(diploid) 30.192
CNS0095595Whole white alabastrum(diploid) 20.212
CNS0095596Whole white alabastrum(diploid) 30.287
CNS0095597Whole white alabastrum(diploid) 40.899
CNS0095598Silvery flower (diploied) 16.720
CNS0095599Silvery flower (diploied) 24.573
CNS0095600Silvery flower (diploied) 354.911
CNS0095601Golden flower (diploid) 13.950
CNS0095602Golden flower (diploid) 244.167
CNS0095603Golden flower (diploid) 343.115
CNS0095604Slightly white alabastrum(tetraploid) 12.788
CNS0095605Slightly white alabastrum(tetraploid) 20.771
CNS0095606Slightly white alabastrum(tetraploid) 38.003
CNS0095607Whole white alabastrum(tetraploid) 10.605
CNS0095608Whole white alabastrum(tetraploid) 20.671
CNS0095609Whole white alabastrum(tetraploid) 30.267
CNS0095610Silvery flower (tetraploid) 118.878
CNS0095611Silvery flower (tetraploid) 222.543
CNS0095612Silvery flower (tetraploid) 31402.617
CNS0095613Golden flower (tetraploid) 153.413
CNS0095614Golden flower (tetraploid) 217.103
CNS0095615Golden flower (tetraploid) 384.827
CRA001975CRR073297Stem 15.027
CRR073298Stem 25.271
CRR073299Stem 33.356
CRR073300Leaf 19.982
CRR073301Leaf 211.002
CRR073302Leaf 311.145
CRR073303Juvenile bud 114.143
CRR073304Juvenile bud 26.769
CRR073305Juvenile bud 315.011
CRR073306Third green 12903.106
CRR073307Third green 21525.161
CRR073308Third green 32002.175
CRR073309Second white 13824.500
CRR073310Second white 23217.951
CRR073311Second white 33831.222
CRR073312Silver flowering 12675.099
CRR073313Silver flowering 22819.081
CRR073314Silver flowering 31823.333
CRR073315Gold flowering 10.415
CRR073316Gold flowering 20.668
CRR073317Gold flowering 30.169
CRR073318Tawny withering 11.130
CRR073319Tawny withering 22.047
CRR073320Tawny withering 30.234