Gene detail

Detail information of GWHGAAZE015069

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011038098.1	0	PREDICTED: serine/threonine-protein phosphatase 7-like isoform X1 [Populus euphratica]
Swissprot	tr\|Q9FN02\|PPP7_ARATH	2E-164	Serine/threonine-protein phosphatase 7
trEMBL	tr\|A0A061DKQ5\|A0A061DKQ5_THECC	0	Serine/threonine-protein phosphatase {ECO:0000256\|RuleBase:RU004273}
TAIR10	AT5G63870.2	3E-121	serine/threonine phosphatase 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	24367201	24371638	+
GWHAAZE00000004	mRNA	24367201	24371638	+
GWHAAZE00000004	exon	24367201	24367565	+
GWHAAZE00000004	exon	24368286	24368329	+
GWHAAZE00000004	exon	24369678	24370158	+
GWHAAZE00000004	exon	24371360	24371638	+
GWHAAZE00000004	five_prime_UTR	24367201	24367310	+
GWHAAZE00000004	CDS	24367311	24367565	+
GWHAAZE00000004	CDS	24368286	24368329	+
GWHAAZE00000004	CDS	24369678	24370158	+
GWHAAZE00000004	CDS	24371360	24371638	+

Transcript Sequence
>GWHTAAZE015083 TGGCCATCAGACGGAACCCTAACCCTAGCTTGGATCACCGACCTAATGTCCACCTTCGAGTGGTCCTCCAGGAACCTGAACCCTCGGACCTTCCCTCTGTGCTGCCGGTGATGGTGTTTGATAAATTGGTGTTAGCCGCATCGAAGATCTTGCACAAGGAGCCGAATTGCGTTATGATTGATGATTGTGGCGGTGATTCCAGTGTTGTCGTGGTCGGTGATGTGCACGGACAGCTGCATGATGTCATGTTTTTGTTGAAGGATGCTGGTTTTCCGGCGGAGAATAGGTTTTTTGTGTTTAATGGTGATTATGTTGATAGAGGAGCTTGGGGACTTGAGACTTTTCTATTGTTGCTGGCTTGGAAGCATTATAAGCATAACTTGGATCGCTTAACACGTTGGCTTGGAAGGGTATATCTTTTACGTGGAAACCATGAATCCAAATACTGCACTTCTGTTTATGGTTTTGAACAAGAAGTATTGGCCAAATATGGAGATGATAGAGGAAAACATATATACCGAAAATGTTTAGGATGTTTCGAAGGACTTCCTCTTGCTTCCATCATAGCTGGCCGTGTTTACACTGCACATGGGGGTCTCTTCCGAAGCATAACTCTTACTCCATCCAAAAGAGCAAAAGGAAAGAAGAATCGTAAAATAATCCTCAATCCCGGAAAGAGTCCTTTAACTCTTGGTTCTTTGGATGAGTTATCTAAAGCTAGGAGATCTGTTCTTAATCCTCCTTGGGAAGGCTTGAACTTGATTCCGGGTGATGTCTTGTGGTCCGACCCATCGATGGAACCTGGACTTTCTCCAAATACAGATAGAGGCATTGGTCTTCTGTGGGGTCCAGATTGTACTGAAGAATTTTTGAAGAAGTTCAATCTAAAGTTAATTATACGATCACATGAAGGGCCCGATGCAAGGGAAAAGAGGCCTGGTCTAGGGACAATGGGAGAAGGTTACACTATAGATCATGTGGTAGAATCTGGGAAACTTATAACTCTCTTCAGTGCTCCTGATTATCCCCAGTTTCAGGTATTTTCTTGTTGTTCCGATTTCATCTTTTTACTTCTTCCTTTATTGCTGTTAGTAGTCTTTCCTGCAGCTTTCCCCTTGAATTTTTTTAGCCATGTGGCATCTTTTCGCAGTTTACAACAGCTTTCTTAA

Network for GWHGAAZE015069

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00149.29	Metallophos	31	269	9.30E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04460	PPP5C	MAPK signaling pathway	map04010

Gene Ontology

GO term	Ontology	Name
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.752
	SRR3591706	second leaf	8.780
	SRR3591707	mature leaf	11.026
	SRR3591708	Shoot apex	10.864
	SRR3591709	Stem	15.873
	SRR3591710	White floral bud	16.489
	SRR3591711	White flower	18.386
	SRR3591712	Green floral bud	18.433
	SRR3591713	Yellow flower	21.052
SRP173429	SRR8316895	Juvenile bud stage	10.297
	SRR8316896	Juvenile bud stage	14.600
	SRR8316897	Juvenile bud stage	7.563
	SRR8316894	Third green stage	7.093
	SRR8316900	Third green stage	22.805
	SRR8316901	Third green stage	22.734
	SRR8316898	Complete white stage	9.992
	SRR8316899	Complete white stage	27.438
	SRR8316903	Complete white stage	19.401
	SRR8316902	Silver flowering stage	12.014
	SRR8316904	Silver flowering stage	18.345
	SRR8316905	Silver flowering stage	8.745
	SRR8316906	Gold flowering stage	29.257
	SRR8316907	Gold flowering stage	28.218
	SRR8316908	Gold flowering stage	29.900
SRP132670	SRR6706286	Control	16.176
	SRR6706287	Light intensity 50%	16.543
	SRR6706288	Light intensity 20%	18.347
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.548
	CNS0095593	Slightly white alabastrum(diploid) 2	10.980
	CNS0095594	Slightly white alabastrum(diploid) 3	9.864
	CNS0095595	Whole white alabastrum(diploid) 2	12.668
	CNS0095596	Whole white alabastrum(diploid) 3	10.606
	CNS0095597	Whole white alabastrum(diploid) 4	11.156
	CNS0095598	Silvery flower (diploied) 1	11.150
	CNS0095599	Silvery flower (diploied) 2	13.218
	CNS0095600	Silvery flower (diploied) 3	24.374
	CNS0095601	Golden flower (diploid) 1	13.941
	CNS0095602	Golden flower (diploid) 2	21.900
	CNS0095603	Golden flower (diploid) 3	22.962
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.380
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.135
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.876
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.672
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.706
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.874
	CNS0095610	Silvery flower (tetraploid) 1	23.670
	CNS0095611	Silvery flower (tetraploid) 2	21.678
	CNS0095612	Silvery flower (tetraploid) 3	31.424
	CNS0095613	Golden flower (tetraploid) 1	14.590
	CNS0095614	Golden flower (tetraploid) 2	17.007
	CNS0095615	Golden flower (tetraploid) 3	21.410
CRA001975	CRR073297	Stem 1	13.954
	CRR073298	Stem 2	13.763
	CRR073299	Stem 3	10.242
	CRR073300	Leaf 1	18.569
	CRR073301	Leaf 2	17.551
	CRR073302	Leaf 3	13.896
	CRR073303	Juvenile bud 1	18.607
	CRR073304	Juvenile bud 2	15.645
	CRR073305	Juvenile bud 3	21.483
	CRR073306	Third green 1	18.704
	CRR073307	Third green 2	13.215
	CRR073308	Third green 3	17.575
	CRR073309	Second white 1	22.307
	CRR073310	Second white 2	19.617
	CRR073311	Second white 3	21.735
	CRR073312	Silver flowering 1	22.499
	CRR073313	Silver flowering 2	29.136
	CRR073314	Silver flowering 3	18.063
	CRR073315	Gold flowering 1	7.801
	CRR073316	Gold flowering 2	11.208
	CRR073317	Gold flowering 3	9.495
	CRR073318	Tawny withering 1	14.662
	CRR073319	Tawny withering 2	12.609
	CRR073320	Tawny withering 3	14.768