Gene detail

Detail information of GWHGAAZE015084

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010272673.1	1.9728E-164	PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase [Nelumbo nucifera]
Swissprot	tr\|Q9AV97\|KDSA1_ARATH	2E-163	2-dehydro-3-deoxyphosphooctonate aldolase 1
trEMBL	tr\|A0A076L2E7\|A0A076L2E7_TOBAC	1E-162	3-desoxy-D-manno octulosonic acid-8-phosphate synthase {ECO:0000313\|EMBL:AII99823.1}
TAIR10	AT1G79500.4	1E-129	Aldolase-type TIM barrel family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	24776268	24780026	+
GWHAAZE00000004	mRNA	24776268	24780026	+
GWHAAZE00000004	exon	24776268	24776303	+
GWHAAZE00000004	exon	24776441	24776538	+
GWHAAZE00000004	exon	24776909	24777005	+
GWHAAZE00000004	exon	24777387	24777452	+
GWHAAZE00000004	exon	24778937	24778996	+
GWHAAZE00000004	exon	24779112	24779186	+
GWHAAZE00000004	exon	24779297	24779381	+
GWHAAZE00000004	exon	24779496	24779554	+
GWHAAZE00000004	exon	24779697	24779741	+
GWHAAZE00000004	exon	24779889	24780026	+
GWHAAZE00000004	CDS	24776268	24776303	+
GWHAAZE00000004	CDS	24776441	24776538	+
GWHAAZE00000004	CDS	24776909	24777005	+
GWHAAZE00000004	CDS	24777387	24777452	+
GWHAAZE00000004	CDS	24778937	24778996	+
GWHAAZE00000004	CDS	24779112	24779186	+
GWHAAZE00000004	CDS	24779297	24779381	+
GWHAAZE00000004	CDS	24779496	24779554	+
GWHAAZE00000004	CDS	24779697	24779741	+
GWHAAZE00000004	CDS	24779889	24780026	+

Transcript Sequence
>GWHTAAZE015100 ATGGATTCCTCGGGAAAGCTATTTAACCAGCTCAAGACAGCAGAACCTTTTTTCCTATTAGCAGGTCCCAATGTCATTGAATCAGAGGAGCATGTTCTACGTATGGCCGGGCACATCAAGGACATTGCATCAAAACTTGGGTTGCAGTTGGTTTTCAAATCAAGCTTTGACAAAGCTAATAGAACATCCTCTAAATCATTTCGAGGTCCTGGCTTAGCTGAAGGCTTGAAGATCCTTGAAAAGGTGAAAGTGGCATATGACATACCCATAGTGACTGATGTACATGAAGCTAATCAGTGCGATGCAGTTGGCAAGGTCGCCGATATAATTCAGATTCCAGCTTTTTTATGCCGACAGACAGATCTCCTAGTTGCAGCTGCCAAGACGGGAAAAATTATCAATATTAAGAAAGGGCAATTTTGTGCTCCTTCTGTCATGGTAAATTCTGCCGAGAAGGTTAGATTGGCCGGAAATCAAAATGTTATGGTTTGTGAGAGAGGAACTATGTTTGGCTATAATGATTTGATTGTTGATCCACGCAACTTCGAATGGATGAGGGAATCAAATTGTCCAATTGTAGCCGATGTCACACACTCATTACAACAACCTGCTGGGAAGAAGTTGGAAGGTGGGGGAGTTGCCAGTGGAGGTCTTCGTGAATTGATACCTTGCATTGCAAGGACAGCTGTTGCTGTTGGAGTGGATGGAATTTTTATGGAGGTACATATTCAGAAAAATGCTCTGACTGATGTTTTCTAG

Network for GWHGAAZE015084

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00793.21	DAHP_synth_1	15	245	1.20E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01627	kdsA	Metabolic pathways	map01100
K01627	kdsA	Lipopolysaccharide biosynthesis	map00540

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0005737	cellular_component	cytoplasm
GO:0008676	molecular_function	3-deoxy-8-phosphooctulonate synthase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.278
	SRR3591706	second leaf	22.544
	SRR3591707	mature leaf	17.876
	SRR3591708	Shoot apex	25.966
	SRR3591709	Stem	17.851
	SRR3591710	White floral bud	9.375
	SRR3591711	White flower	5.692
	SRR3591712	Green floral bud	30.238
	SRR3591713	Yellow flower	4.220
SRP173429	SRR8316895	Juvenile bud stage	25.076
	SRR8316896	Juvenile bud stage	37.443
	SRR8316897	Juvenile bud stage	18.578
	SRR8316894	Third green stage	14.273
	SRR8316900	Third green stage	43.272
	SRR8316901	Third green stage	38.368
	SRR8316898	Complete white stage	3.466
	SRR8316899	Complete white stage	34.065
	SRR8316903	Complete white stage	3.988
	SRR8316902	Silver flowering stage	1.316
	SRR8316904	Silver flowering stage	0.770
	SRR8316905	Silver flowering stage	0.439
	SRR8316906	Gold flowering stage	1.942
	SRR8316907	Gold flowering stage	1.684
	SRR8316908	Gold flowering stage	2.667
SRP132670	SRR6706286	Control	38.498
	SRR6706287	Light intensity 50%	40.287
	SRR6706288	Light intensity 20%	48.292
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.380
	CNS0095593	Slightly white alabastrum(diploid) 2	25.865
	CNS0095594	Slightly white alabastrum(diploid) 3	23.957
	CNS0095595	Whole white alabastrum(diploid) 2	25.344
	CNS0095596	Whole white alabastrum(diploid) 3	21.555
	CNS0095597	Whole white alabastrum(diploid) 4	18.428
	CNS0095598	Silvery flower (diploied) 1	11.809
	CNS0095599	Silvery flower (diploied) 2	15.120
	CNS0095600	Silvery flower (diploied) 3	4.775
	CNS0095601	Golden flower (diploid) 1	10.059
	CNS0095602	Golden flower (diploid) 2	6.805
	CNS0095603	Golden flower (diploid) 3	6.320
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.834
	CNS0095605	Slightly white alabastrum(tetraploid) 2	35.417
	CNS0095606	Slightly white alabastrum(tetraploid) 3	56.419
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.118
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.189
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.972
	CNS0095610	Silvery flower (tetraploid) 1	1.940
	CNS0095611	Silvery flower (tetraploid) 2	4.154
	CNS0095612	Silvery flower (tetraploid) 3	1.403
	CNS0095613	Golden flower (tetraploid) 1	0.531
	CNS0095614	Golden flower (tetraploid) 2	1.183
	CNS0095615	Golden flower (tetraploid) 3	0.134
CRA001975	CRR073297	Stem 1	37.312
	CRR073298	Stem 2	28.996
	CRR073299	Stem 3	34.255
	CRR073300	Leaf 1	33.494
	CRR073301	Leaf 2	30.498
	CRR073302	Leaf 3	44.981
	CRR073303	Juvenile bud 1	34.039
	CRR073304	Juvenile bud 2	22.191
	CRR073305	Juvenile bud 3	37.451
	CRR073306	Third green 1	1.709
	CRR073307	Third green 2	1.182
	CRR073308	Third green 3	1.545
	CRR073309	Second white 1	1.372
	CRR073310	Second white 2	0.917
	CRR073311	Second white 3	0.240
	CRR073312	Silver flowering 1	0.791
	CRR073313	Silver flowering 2	0.242
	CRR073314	Silver flowering 3	0.191
	CRR073315	Gold flowering 1	19.728
	CRR073316	Gold flowering 2	21.943
	CRR073317	Gold flowering 3	13.864
	CRR073318	Tawny withering 1	21.577
	CRR073319	Tawny withering 2	22.249
	CRR073320	Tawny withering 3	17.941