Detail information of GWHGAAZE015097


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO97935.10unnamed protein product [Coffea canephora]
Swissprottr|O65456|PLY16_ARATH2E-111Probable pectate lyase 16 (Precursor)
trEMBLtr|A0A068TNL9|A0A068TNL9_COFCA0Pectate lyase {ECO:0000256|RuleBase:RU361123}
TAIR10AT5G09280.15E-111Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2504627825047940-
GWHAAZE00000004mRNA2504627825047940-
GWHAAZE00000004exon2504627825046502-
GWHAAZE00000004exon2504658625046721-
GWHAAZE00000004exon2504694925047304-
GWHAAZE00000004exon2504748225047940-
GWHAAZE00000004CDS2504748225047940-
GWHAAZE00000004CDS2504694925047304-
GWHAAZE00000004CDS2504658625046721-
GWHAAZE00000004CDS2504627825046502-
Transcript Sequence

Network for GWHGAAZE015097

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00544.20Pectate_lyase_41323084.40E-21
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01728pel Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Quorum sensingmap02024

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.063
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.079
SRR3591709Stem0.140
SRR3591710White floral bud0.653
SRR3591711White flower0.297
SRR3591712Green floral bud0.384
SRR3591713Yellow flower0.075
SRP173429 SRR8316895Juvenile bud stage 0.000
SRR8316896Juvenile bud stage 0.199
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.000
SRR8316900Third green stage 0.148
SRR8316901Third green stage 0.054
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.029
SRR8316905Silver flowering stage0.029
SRR8316906Gold flowering stage 0.002
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.113
SRR6706287Light intensity 50%0.033
SRR6706288Light intensity 20%0.000
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.074
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.000
CNS0095595Whole white alabastrum(diploid) 20.155
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.517
CNS0095600Silvery flower (diploied) 30.035
CNS0095601Golden flower (diploid) 10.290
CNS0095602Golden flower (diploid) 20.088
CNS0095603Golden flower (diploid) 30.114
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.390
CNS0095608Whole white alabastrum(tetraploid) 20.067
CNS0095609Whole white alabastrum(tetraploid) 30.038
CNS0095610Silvery flower (tetraploid) 10.048
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.033
CNS0095613Golden flower (tetraploid) 10.465
CNS0095614Golden flower (tetraploid) 20.003
CNS0095615Golden flower (tetraploid) 30.327
CRA001975CRR073297Stem 10.000
CRR073298Stem 20.174
CRR073299Stem 30.036
CRR073300Leaf 10.000
CRR073301Leaf 20.094
CRR073302Leaf 30.070
CRR073303Juvenile bud 10.306
CRR073304Juvenile bud 20.720
CRR073305Juvenile bud 30.039
CRR073306Third green 10.208
CRR073307Third green 20.629
CRR073308Third green 30.132
CRR073309Second white 10.000
CRR073310Second white 20.512
CRR073311Second white 30.182
CRR073312Silver flowering 10.491
CRR073313Silver flowering 20.870
CRR073314Silver flowering 30.055
CRR073315Gold flowering 10.338
CRR073316Gold flowering 20.188
CRR073317Gold flowering 30.029
CRR073318Tawny withering 10.252
CRR073319Tawny withering 20.543
CRR073320Tawny withering 30.313