Detail information of GWHGAAZE015105


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP01698.10unnamed protein product [Coffea canephora]
Swissprottr|Q9FFI5|NAC86_ARATH7E-116NAC domain-containing protein 86 {ECO:0000312|EMBL:AED92405.1}
trEMBLtr|A0A068U296|A0A068U296_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313|EMBL:CDP01698.1}
TAIR10AT1G65910.11E-144NAC domain containing protein 28

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2518718025191760-
GWHAAZE00000004mRNA2518718025191760-
GWHAAZE00000004exon2519153825191760-
GWHAAZE00000004exon2518941025189687-
GWHAAZE00000004exon2518888025189206-
GWHAAZE00000004exon2518830225188691-
GWHAAZE00000004exon2518803425188109-
GWHAAZE00000004exon2518718025187826-
GWHAAZE00000004five_prime_UTR2519169525191760-
GWHAAZE00000004CDS2519153825191694-
GWHAAZE00000004CDS2518941025189687-
GWHAAZE00000004CDS2518888025189206-
GWHAAZE00000004CDS2518830225188691-
GWHAAZE00000004CDS2518803425188109-
GWHAAZE00000004CDS2518718025187826-
Transcript Sequence

Network for GWHGAAZE015105

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02365.16NAM71332.80E-40
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyNAC

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.338
SRR3591706second leaf3.959
SRR3591707mature leaf0.393
SRR3591708Shoot apex3.882
SRR3591709Stem4.969
SRR3591710White floral bud3.500
SRR3591711White flower2.032
SRR3591712Green floral bud6.056
SRR3591713Yellow flower0.712
SRP173429 SRR8316895Juvenile bud stage 1.588
SRR8316896Juvenile bud stage 1.980
SRR8316897Juvenile bud stage 0.646
SRR8316894Third green stage 1.280
SRR8316900Third green stage 3.295
SRR8316901Third green stage 3.952
SRR8316898Complete white stage 0.128
SRR8316899Complete white stage 1.124
SRR8316903Complete white stage 0.250
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.199
SRR8316905Silver flowering stage0.056
SRR8316906Gold flowering stage 0.090
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.122
SRP132670SRR6706286Control1.170
SRR6706287Light intensity 50%0.706
SRR6706288Light intensity 20%0.968
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.643
CNS0095593Slightly white alabastrum(diploid) 24.754
CNS0095594Slightly white alabastrum(diploid) 34.011
CNS0095595Whole white alabastrum(diploid) 22.345
CNS0095596Whole white alabastrum(diploid) 30.832
CNS0095597Whole white alabastrum(diploid) 40.941
CNS0095598Silvery flower (diploied) 10.255
CNS0095599Silvery flower (diploied) 20.262
CNS0095600Silvery flower (diploied) 30.086
CNS0095601Golden flower (diploid) 10.439
CNS0095602Golden flower (diploid) 20.213
CNS0095603Golden flower (diploid) 30.216
CNS0095604Slightly white alabastrum(tetraploid) 14.417
CNS0095605Slightly white alabastrum(tetraploid) 22.816
CNS0095606Slightly white alabastrum(tetraploid) 36.497
CNS0095607Whole white alabastrum(tetraploid) 11.576
CNS0095608Whole white alabastrum(tetraploid) 20.683
CNS0095609Whole white alabastrum(tetraploid) 30.845
CNS0095610Silvery flower (tetraploid) 10.317
CNS0095611Silvery flower (tetraploid) 20.304
CNS0095612Silvery flower (tetraploid) 30.440
CNS0095613Golden flower (tetraploid) 10.019
CNS0095614Golden flower (tetraploid) 20.139
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 11.215
CRR073298Stem 21.494
CRR073299Stem 30.941
CRR073300Leaf 11.365
CRR073301Leaf 22.026
CRR073302Leaf 31.509
CRR073303Juvenile bud 10.033
CRR073304Juvenile bud 20.088
CRR073305Juvenile bud 30.582
CRR073306Third green 10.112
CRR073307Third green 20.026
CRR073308Third green 30.217
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.034
CRR073312Silver flowering 10.070
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.002
CRR073315Gold flowering 10.071
CRR073316Gold flowering 20.165
CRR073317Gold flowering 30.428
CRR073318Tawny withering 11.926
CRR073319Tawny withering 21.519
CRR073320Tawny withering 32.302