Gene detail

Detail information of GWHGAAZE015107

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006350461.1	9.7034E-166	PREDICTED: autophagy protein 5-like [Solanum tuberosum]
Swissprot	tr\|Q9FFI2\|ATG5_ARATH	2E-141	Autophagy protein 5
trEMBL	tr\|A0A068TZK9\|A0A068TZK9_COFCA	8E-165	Autophagy protein 5 {ECO:0000256\|RuleBase:RU361202}
TAIR10	AT5G17290.1	3E-113	autophagy protein Apg5 family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	25236505	25249326	-
GWHAAZE00000004	mRNA	25236505	25249326	-
GWHAAZE00000004	exon	25249181	25249326	-
GWHAAZE00000004	exon	25244278	25244338	-
GWHAAZE00000004	exon	25242816	25242940	-
GWHAAZE00000004	exon	25241845	25241911	-
GWHAAZE00000004	exon	25241053	25241139	-
GWHAAZE00000004	exon	25239997	25240084	-
GWHAAZE00000004	exon	25239537	25239683	-
GWHAAZE00000004	exon	25238051	25238179	-
GWHAAZE00000004	exon	25236505	25236833	-
GWHAAZE00000004	CDS	25249181	25249326	-
GWHAAZE00000004	CDS	25244278	25244338	-
GWHAAZE00000004	CDS	25242816	25242940	-
GWHAAZE00000004	CDS	25241845	25241911	-
GWHAAZE00000004	CDS	25241053	25241139	-
GWHAAZE00000004	CDS	25239997	25240084	-
GWHAAZE00000004	CDS	25239537	25239683	-
GWHAAZE00000004	CDS	25238051	25238179	-
GWHAAZE00000004	CDS	25236505	25236833	-

Transcript Sequence
>GWHTAAZE015123 ATGAAGGGATTGAGTGAAAGGTACTGTGCAACAGATTGTGAAGCAATGAACCTCCTGCAAATGTACACACGCACAGAGAGGCCGTTTTTGAAGGAGGCGGTTGGTCGTGAAATTCCGGGTTCGGATCTTCTGCATACGCAAGTCGAGGTTGTGGTGATTAAGGTAGTTGGCCAGTTGGAATCTGAGTTGCTCAGGTATGAGTATGCTATCTTAGCTCCTCGGATTGGTTACCTACCTTTGTTAGCTCAACATATTAAGCCTTTCTTCAGTAGTGCACTTCCTCCTGGGGTAGATACTGTATGGTTTGACTACAAAGGATTGCCCCTCAAATGGTATATACCGACAGGAGTGCTTTTTGATCTTCTTTGTGCGGAACCAGAGAGACCTTGGAATCTAACGGTGCATTTTCGAGGATACCCAACGAATATGACCCCATGTGAAGGTGAAGAAAGTGTAAAATGGGGCTTTATTAACTCATTGAAAGAGGCTGCATATATAATCAATGGGAACTGCAAGAATATCATGAATATGTCCCAACCTGATCAGGTGGAGCTTTGGCGGTCCATTGTGAATGGTAACTTGGAAACCTATCTCCGGGTTTCATCAAAGCTAAAACTTGGAACATTTGGAGACGATTTTTCAGTCAAATTGAACTCATCCTCTCCCAAATCTCGTCAGAGTGTAAATGAAACAGATGCTGCTACTGGTGCAGTTAGAACAGGTAGAATTCCAGTGCGTTTGTATGTTTGGAGCTCCAATGAGGATTTTGACGATTTAGAAGATGCGCCTTACTTTGATAGCTGGGACAAAATTGTGTACATAAATCGACCTGTCGAGATTCATGGAGAAGGAAAATGCTTCACCTTGTGTGATGCAATAAAAACTCTACTACCAGAGTTTTTTGCGGACAAGTTTCAAATGAACGGCAATATATCCCTAACCAATACTGAGGATGAACTGATAAAACACTCGGAAGAAACGAAAAGCACAGAGGAAACTAGCGAAAAATTGGTTGAAAATGGTCTATCGGATAACGTGGAGATTAAACTGGTACGCATTCAAGGGATCGAACCGAAATTAGAGATACCCTTTGGTTGGGTGGTGAACAACTTGATGAATCCTGAGCATTTTCTTCACATATGTGTTTATGTCAAAGTTGCAGAACCGATTACCATATGA

Network for GWHGAAZE015107

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04106.13	APG5	111	382	8.00E-60

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08339	ATG5	Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136
		Mitophagy - animal	map04137
		Ferroptosis	map04216
		NOD-like receptor signaling pathway	map04621
		RIG-I-like receptor signaling pathway	map04622
		Longevity regulating pathway	map04211
		Longevity regulating pathway - multiple species	map04213

Gene Ontology

GO term	Ontology	Name
GO:0006914	biological_process	autophagy
GO:0005737	cellular_component	cytoplasm

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.775
	SRR3591706	second leaf	7.846
	SRR3591707	mature leaf	9.229
	SRR3591708	Shoot apex	10.373
	SRR3591709	Stem	19.563
	SRR3591710	White floral bud	15.554
	SRR3591711	White flower	24.726
	SRR3591712	Green floral bud	12.342
	SRR3591713	Yellow flower	27.244
SRP173429	SRR8316895	Juvenile bud stage	8.543
	SRR8316896	Juvenile bud stage	11.869
	SRR8316897	Juvenile bud stage	4.660
	SRR8316894	Third green stage	3.502
	SRR8316900	Third green stage	9.805
	SRR8316901	Third green stage	9.700
	SRR8316898	Complete white stage	5.346
	SRR8316899	Complete white stage	16.296
	SRR8316903	Complete white stage	9.977
	SRR8316902	Silver flowering stage	9.187
	SRR8316904	Silver flowering stage	10.978
	SRR8316905	Silver flowering stage	4.842
	SRR8316906	Gold flowering stage	18.494
	SRR8316907	Gold flowering stage	16.695
	SRR8316908	Gold flowering stage	20.603
SRP132670	SRR6706286	Control	2.900
	SRR6706287	Light intensity 50%	2.569
	SRR6706288	Light intensity 20%	2.991
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.676
	CNS0095593	Slightly white alabastrum(diploid) 2	7.269
	CNS0095594	Slightly white alabastrum(diploid) 3	9.331
	CNS0095595	Whole white alabastrum(diploid) 2	7.830
	CNS0095596	Whole white alabastrum(diploid) 3	7.348
	CNS0095597	Whole white alabastrum(diploid) 4	9.129
	CNS0095598	Silvery flower (diploied) 1	12.811
	CNS0095599	Silvery flower (diploied) 2	9.842
	CNS0095600	Silvery flower (diploied) 3	13.919
	CNS0095601	Golden flower (diploid) 1	10.956
	CNS0095602	Golden flower (diploid) 2	13.556
	CNS0095603	Golden flower (diploid) 3	14.070
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.216
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.658
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.955
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.084
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.226
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.080
	CNS0095610	Silvery flower (tetraploid) 1	17.463
	CNS0095611	Silvery flower (tetraploid) 2	14.858
	CNS0095612	Silvery flower (tetraploid) 3	15.268
	CNS0095613	Golden flower (tetraploid) 1	13.953
	CNS0095614	Golden flower (tetraploid) 2	16.206
	CNS0095615	Golden flower (tetraploid) 3	19.216
CRA001975	CRR073297	Stem 1	8.114
	CRR073298	Stem 2	7.556
	CRR073299	Stem 3	4.423
	CRR073300	Leaf 1	5.931
	CRR073301	Leaf 2	4.260
	CRR073302	Leaf 3	4.699
	CRR073303	Juvenile bud 1	5.155
	CRR073304	Juvenile bud 2	3.381
	CRR073305	Juvenile bud 3	4.680
	CRR073306	Third green 1	2.855
	CRR073307	Third green 2	3.770
	CRR073308	Third green 3	3.488
	CRR073309	Second white 1	4.144
	CRR073310	Second white 2	4.353
	CRR073311	Second white 3	5.550
	CRR073312	Silver flowering 1	5.293
	CRR073313	Silver flowering 2	4.509
	CRR073314	Silver flowering 3	2.492
	CRR073315	Gold flowering 1	4.978
	CRR073316	Gold flowering 2	6.660
	CRR073317	Gold flowering 3	2.229
	CRR073318	Tawny withering 1	5.868
	CRR073319	Tawny withering 2	8.623
	CRR073320	Tawny withering 3	6.285