Gene detail

Detail information of GWHGAAZE015112

Functional Annotation

Database	Orthologs	Annotation
Nr	AII73556.1	UGP-glucose pyrophosphorylase [Actinidia eriantha]
Swissprot	tr\|P19595\|UGPA_SOLTU	UTP--glucose-1-phosphate uridylyltransferase
trEMBL	tr\|A0A076JE12\|A0A076JE12_ACTER	UGP-glucose pyrophosphorylase {ECO:0000313\|EMBL:AII73556.1}
TAIR10	AT5G17310.2	UDP-glucose pyrophosphorylase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	25311256	25316987	+
GWHAAZE00000004	mRNA	25311256	25316987	+
GWHAAZE00000004	exon	25311256	25311338	+
GWHAAZE00000004	exon	25311435	25311482	+
GWHAAZE00000004	exon	25312294	25312385	+
GWHAAZE00000004	exon	25312541	25312631	+
GWHAAZE00000004	exon	25312880	25312940	+
GWHAAZE00000004	exon	25313042	25313206	+
GWHAAZE00000004	exon	25313279	25313329	+
GWHAAZE00000004	exon	25313432	25313505	+
GWHAAZE00000004	exon	25313780	25313852	+
GWHAAZE00000004	exon	25313941	25313998	+
GWHAAZE00000004	exon	25314152	25314198	+
GWHAAZE00000004	exon	25314278	25314343	+
GWHAAZE00000004	exon	25314584	25314658	+
GWHAAZE00000004	exon	25315052	25315104	+
GWHAAZE00000004	exon	25315170	25315245	+
GWHAAZE00000004	exon	25315336	25315392	+
GWHAAZE00000004	exon	25315477	25315560	+
GWHAAZE00000004	exon	25316157	25316255	+
GWHAAZE00000004	exon	25316353	25316457	+
GWHAAZE00000004	exon	25316886	25316987	+
GWHAAZE00000004	CDS	25311256	25311338	+
GWHAAZE00000004	CDS	25311435	25311482	+
GWHAAZE00000004	CDS	25312294	25312385	+
GWHAAZE00000004	CDS	25312541	25312631	+
GWHAAZE00000004	CDS	25312880	25312940	+
GWHAAZE00000004	CDS	25313042	25313206	+
GWHAAZE00000004	CDS	25313279	25313329	+
GWHAAZE00000004	CDS	25313432	25313505	+
GWHAAZE00000004	CDS	25313780	25313852	+
GWHAAZE00000004	CDS	25313941	25313998	+
GWHAAZE00000004	CDS	25314152	25314198	+
GWHAAZE00000004	CDS	25314278	25314343	+
GWHAAZE00000004	CDS	25314584	25314658	+
GWHAAZE00000004	CDS	25315052	25315104	+
GWHAAZE00000004	CDS	25315170	25315245	+
GWHAAZE00000004	CDS	25315336	25315392	+
GWHAAZE00000004	CDS	25315477	25315560	+
GWHAAZE00000004	CDS	25316157	25316255	+
GWHAAZE00000004	CDS	25316353	25316457	+
GWHAAZE00000004	CDS	25316886	25316987	+

Transcript Sequence
>GWHTAAZE015128 ATGGCTGCTGTTACTTTGACCCCGGCTGATATTGAGAAGGTCACCAACCTCAAAGCTGCTGTTGATGGCCTCGCTCAGATCACTGACAATGAGAAATCTGGATTCATCAATCTCGTTACTCGCTCTCTAAGTGGCGAAGCACAACATGTTGAATGGAGTAAAATCCAGACTCCTACTGATGAGATAGTGGTGCCTTATGATAGCTTAGCATCTGTGCCTGAAGATCCTGCCGAAACTAAGAAACTGTTGGACAAACTTGTGGTGTTAAAGCTTAATGGAGGTTTGGGGACAACAATGGGCTGTACCGGTCCAAAGTCAGTCATTGAAGTTAGGAATGGTATGACATTCCTAGACTTAATTGTCACCCAAATTGAGTCACTCAACTCCAAGTATGGATGCAATGTGCCCCTGCTACTGATGAACTCATTCAACACACATGAGGATACACAAAAGGTGACAAACATTTGCGTTTTACCTTTTGCCAATGGACAAAGTAGACTTGATGATAACTTGAACTTCTTGAATGTAGATTCTGAAAAAATTCTTGAAAAATATGCCAACTCGAAGATTGAGATCCATACGTTTAATCAGAGCCAATACCCTCGTTTGGTTGTTGAGGATTTCTTGCCCCTACCATGCAAAGGAATTGCTACTAAGGACGGATGGTATCCCCCTGGCCATGGTGATATCTTCCCATCGTTGATGAATAGTGGCAAGCTCGATGCTTTAATGTCTCAGGGCAAGGAATATGCATTTGTTGCGAATTCGGATAACTTAGGAGCTATCGTTGATTTAAAAATCTTGAATCACTTGGTGGTGAAAAAGAACGAATACTGCATGGAGGTGACACCCAAAACACTGGCTGATGTGAAGGGTGGTACTCTAATTTCTTATGACGGTAAAGTCCAGCTCCTAGAAATTGCACAAGTTCCTGATGCACATGTGAGCTCTGGTTCTTTTGGTTTCTCTCCTACTGCTTTTACCGTCAGCGAATTCAAATCAATTGAGAAGTTCAAGATATTCAATACCAACAACTTGTGGTTGAACTTGGCGGCTGTTAAAAGACTTGTACAAGCCGAAGCACTTAAAATGGAAATTATTCCAAACCCAAAGGAAGTGAATGGAATTAAAGTTCTCCAGCTAGAAACAGCGGCTGGTGCTGCGATTAAGTTCTTTGATAATGCCATTGGAATCAATGTTCCCCGATCGCGGTTCCTTCCAGTTAAAGCAACTTCTGATTTGCTTCTTGTCCAGTCCGATCTTTACACCGTATCCGATGGCTTTGTGGTTCGAAATAATGCCAGGAAAAATCCTGAAAACCCTTCTATTGAATTGGGACCCGAGTTCAAAAAGGTTGGTGACTTCTTGAGCCGTTTCAAGACTATTCCTAGCATTATTGAGCTCGACAGCTTGAAGGTGACTGGTGACGTTTCATTTGGATCGGGCATCACTCTTAAGGGGAAAGTGGTGATTAATGCGAAACCTGGGGCTAAGTTGGAAATTCCTGATGGAACTGTAATTGCAACCAAGGTGATTTTATTTGATTTAACATTTCTTTAA

Network for GWHGAAZE015112

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01704.19	UDPGP	34	153	1.00E-43
PF01704.19	UDPGP	177	486	4.50E-121

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00963	UGP2, galU, galF	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Pentose and glucuronate interconversions	map00040
		Galactose metabolism	map00052
		Starch and sucrose metabolism	map00500
		Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0006011	biological_process	UDP-glucose metabolic process
GO:0003983	molecular_function	UTP:glucose-1-phosphate uridylyltransferase activity
GO:0070569	molecular_function	uridylyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.607
	SRR3591706	second leaf	0.004
	SRR3591707	mature leaf	0.195
	SRR3591708	Shoot apex	2.590
	SRR3591709	Stem	1.848
	SRR3591710	White floral bud	19.207
	SRR3591711	White flower	3.744
	SRR3591712	Green floral bud	257.859
	SRR3591713	Yellow flower	0.553
SRP173429	SRR8316895	Juvenile bud stage	6.331
	SRR8316896	Juvenile bud stage	104.374
	SRR8316897	Juvenile bud stage	70.909
	SRR8316894	Third green stage	67.098
	SRR8316900	Third green stage	294.079
	SRR8316901	Third green stage	289.054
	SRR8316898	Complete white stage	0.122
	SRR8316899	Complete white stage	1.997
	SRR8316903	Complete white stage	0.352
	SRR8316902	Silver flowering stage	0.655
	SRR8316904	Silver flowering stage	2.276
	SRR8316905	Silver flowering stage	0.315
	SRR8316906	Gold flowering stage	0.535
	SRR8316907	Gold flowering stage	0.193
	SRR8316908	Gold flowering stage	0.044
SRP132670	SRR6706286	Control	80.730
	SRR6706287	Light intensity 50%	86.857
	SRR6706288	Light intensity 20%	81.298
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	75.945
	CNS0095593	Slightly white alabastrum(diploid) 2	58.143
	CNS0095594	Slightly white alabastrum(diploid) 3	86.579
	CNS0095595	Whole white alabastrum(diploid) 2	105.091
	CNS0095596	Whole white alabastrum(diploid) 3	137.591
	CNS0095597	Whole white alabastrum(diploid) 4	107.152
	CNS0095598	Silvery flower (diploied) 1	0.498
	CNS0095599	Silvery flower (diploied) 2	5.665
	CNS0095600	Silvery flower (diploied) 3	0.602
	CNS0095601	Golden flower (diploid) 1	0.724
	CNS0095602	Golden flower (diploid) 2	1.055
	CNS0095603	Golden flower (diploid) 3	0.774
	CNS0095604	Slightly white alabastrum(tetraploid) 1	206.791
	CNS0095605	Slightly white alabastrum(tetraploid) 2	163.367
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.437
	CNS0095607	Whole white alabastrum(tetraploid) 1	244.779
	CNS0095608	Whole white alabastrum(tetraploid) 2	297.253
	CNS0095609	Whole white alabastrum(tetraploid) 3	337.259
	CNS0095610	Silvery flower (tetraploid) 1	0.373
	CNS0095611	Silvery flower (tetraploid) 2	2.153
	CNS0095612	Silvery flower (tetraploid) 3	8.743
	CNS0095613	Golden flower (tetraploid) 1	0.368
	CNS0095614	Golden flower (tetraploid) 2	0.207
	CNS0095615	Golden flower (tetraploid) 3	5.153
CRA001975	CRR073297	Stem 1	18.866
	CRR073298	Stem 2	34.725
	CRR073299	Stem 3	14.837
	CRR073300	Leaf 1	53.261
	CRR073301	Leaf 2	54.848
	CRR073302	Leaf 3	55.123
	CRR073303	Juvenile bud 1	60.640
	CRR073304	Juvenile bud 2	65.677
	CRR073305	Juvenile bud 3	3.657
	CRR073306	Third green 1	12.287
	CRR073307	Third green 2	23.758
	CRR073308	Third green 3	15.667
	CRR073309	Second white 1	2.408
	CRR073310	Second white 2	3.875
	CRR073311	Second white 3	4.302
	CRR073312	Silver flowering 1	17.047
	CRR073313	Silver flowering 2	20.098
	CRR073314	Silver flowering 3	7.422
	CRR073315	Gold flowering 1	15.788
	CRR073316	Gold flowering 2	3.388
	CRR073317	Gold flowering 3	15.352
	CRR073318	Tawny withering 1	13.101
	CRR073319	Tawny withering 2	19.614
	CRR073320	Tawny withering 3	13.429