Detail information of GWHGAAZE015121


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007015808.12.1031E-131Cytochrome c oxidase assembly protein CtaG / Cox11 family isoform 2 [Theobroma cacao]
Swissprottr|Q8GWR0|COX11_ARATH5E-121Cytochrome c oxidase assembly protein COX11, mitochondrial (Precursor)
trEMBLtr|A0A061GW59|A0A061GW59_THECC8E-132Cytochrome c oxidase assembly protein CtaG / Cox11 family isoform 2 {ECO:0000313|EMBL:EOY33427.1}
TAIR10AT1G02410.17E-97cytochrome c oxidase assembly protein CtaG / Cox11 family

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2550989325512549-
GWHAAZE00000004mRNA2550989325512549-
GWHAAZE00000004exon2550989325509994-
GWHAAZE00000004exon2551009525510175-
GWHAAZE00000004exon2551064725510751-
GWHAAZE00000004exon2551154925511621-
GWHAAZE00000004exon2551185525511907-
GWHAAZE00000004exon2551227125512549-
GWHAAZE00000004CDS2551227125512549-
GWHAAZE00000004CDS2551185525511907-
GWHAAZE00000004CDS2551154925511621-
GWHAAZE00000004CDS2551064725510751-
GWHAAZE00000004CDS2551009525510175-
GWHAAZE00000004CDS2550989325509994-
Transcript Sequence

Network for GWHGAAZE015121

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04442.15CtaG_Cox11722267.40E-60
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02258COX11, ctaG Metabolic pathways map01100
Oxidative phosphorylationmap00190
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0005507molecular_functioncopper ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.803
SRR3591706second leaf10.229
SRR3591707mature leaf9.887
SRR3591708Shoot apex10.130
SRR3591709Stem10.161
SRR3591710White floral bud8.136
SRR3591711White flower17.378
SRR3591712Green floral bud8.911
SRR3591713Yellow flower13.193
SRP173429 SRR8316895Juvenile bud stage 10.180
SRR8316896Juvenile bud stage 13.782
SRR8316897Juvenile bud stage 7.094
SRR8316894Third green stage 8.468
SRR8316900Third green stage 17.161
SRR8316901Third green stage 21.229
SRR8316898Complete white stage 10.674
SRR8316899Complete white stage 24.405
SRR8316903Complete white stage 16.347
SRR8316902Silver flowering stage14.731
SRR8316904Silver flowering stage15.233
SRR8316905Silver flowering stage7.943
SRR8316906Gold flowering stage 22.122
SRR8316907Gold flowering stage 22.018
SRR8316908Gold flowering stage 26.659
SRP132670SRR6706286Control14.963
SRR6706287Light intensity 50%16.534
SRR6706288Light intensity 20%15.495
CNP0000432CNS0095592Slightly white alabastrum(diploid) 119.716
CNS0095593Slightly white alabastrum(diploid) 213.907
CNS0095594Slightly white alabastrum(diploid) 312.474
CNS0095595Whole white alabastrum(diploid) 212.429
CNS0095596Whole white alabastrum(diploid) 310.687
CNS0095597Whole white alabastrum(diploid) 414.523
CNS0095598Silvery flower (diploied) 129.298
CNS0095599Silvery flower (diploied) 222.244
CNS0095600Silvery flower (diploied) 324.980
CNS0095601Golden flower (diploid) 124.931
CNS0095602Golden flower (diploid) 222.657
CNS0095603Golden flower (diploid) 321.251
CNS0095604Slightly white alabastrum(tetraploid) 112.966
CNS0095605Slightly white alabastrum(tetraploid) 213.092
CNS0095606Slightly white alabastrum(tetraploid) 321.046
CNS0095607Whole white alabastrum(tetraploid) 19.793
CNS0095608Whole white alabastrum(tetraploid) 28.150
CNS0095609Whole white alabastrum(tetraploid) 311.301
CNS0095610Silvery flower (tetraploid) 142.178
CNS0095611Silvery flower (tetraploid) 238.786
CNS0095612Silvery flower (tetraploid) 323.804
CNS0095613Golden flower (tetraploid) 129.059
CNS0095614Golden flower (tetraploid) 234.903
CNS0095615Golden flower (tetraploid) 317.398
CRA001975CRR073297Stem 113.867
CRR073298Stem 212.535
CRR073299Stem 39.222
CRR073300Leaf 116.654
CRR073301Leaf 218.213
CRR073302Leaf 38.383
CRR073303Juvenile bud 19.410
CRR073304Juvenile bud 25.510
CRR073305Juvenile bud 38.582
CRR073306Third green 14.850
CRR073307Third green 23.917
CRR073308Third green 33.250
CRR073309Second white 16.295
CRR073310Second white 28.863
CRR073311Second white 35.918
CRR073312Silver flowering 11.681
CRR073313Silver flowering 22.233
CRR073314Silver flowering 31.021
CRR073315Gold flowering 112.520
CRR073316Gold flowering 211.989
CRR073317Gold flowering 36.259
CRR073318Tawny withering 18.155
CRR073319Tawny withering 210.349
CRR073320Tawny withering 310.053