Detail information of GWHGAAZE015124


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002265288.10PREDICTED: 60S ribosomal export protein NMD3 [Vitis vinifera]
trEMBLtr|A5AXA8|A5AXA8_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN60703.1}
TAIR10AT2G03820.10nonsense-mediated mRNA decay NMD3 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2559824325599763+
GWHAAZE00000004mRNA2559824325599763+
GWHAAZE00000004exon2559824325599763+
GWHAAZE00000004CDS2559824325599763+
Transcript Sequence

Network for GWHGAAZE015124

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04981.14NMD3132427.50E-76
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07562NMD3 RNA transport map03013
Ribosome biogenesis in eukaryotesmap03008

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf43.030
SRR3591706second leaf26.865
SRR3591707mature leaf23.149
SRR3591708Shoot apex33.795
SRR3591709Stem37.417
SRR3591710White floral bud49.321
SRR3591711White flower56.862
SRR3591712Green floral bud52.069
SRR3591713Yellow flower46.732
SRP173429 SRR8316895Juvenile bud stage 24.291
SRR8316896Juvenile bud stage 40.385
SRR8316897Juvenile bud stage 19.434
SRR8316894Third green stage 17.782
SRR8316900Third green stage 53.090
SRR8316901Third green stage 54.771
SRR8316898Complete white stage 18.049
SRR8316899Complete white stage 54.011
SRR8316903Complete white stage 28.289
SRR8316902Silver flowering stage21.987
SRR8316904Silver flowering stage30.937
SRR8316905Silver flowering stage16.726
SRR8316906Gold flowering stage 43.559
SRR8316907Gold flowering stage 43.584
SRR8316908Gold flowering stage 49.380
SRP132670SRR6706286Control51.970
SRR6706287Light intensity 50%56.222
SRR6706288Light intensity 20%59.896
CNP0000432CNS0095592Slightly white alabastrum(diploid) 127.860
CNS0095593Slightly white alabastrum(diploid) 226.872
CNS0095594Slightly white alabastrum(diploid) 330.116
CNS0095595Whole white alabastrum(diploid) 224.803
CNS0095596Whole white alabastrum(diploid) 327.305
CNS0095597Whole white alabastrum(diploid) 420.913
CNS0095598Silvery flower (diploied) 122.598
CNS0095599Silvery flower (diploied) 222.811
CNS0095600Silvery flower (diploied) 339.648
CNS0095601Golden flower (diploid) 116.814
CNS0095602Golden flower (diploid) 232.477
CNS0095603Golden flower (diploid) 332.350
CNS0095604Slightly white alabastrum(tetraploid) 133.015
CNS0095605Slightly white alabastrum(tetraploid) 227.644
CNS0095606Slightly white alabastrum(tetraploid) 346.275
CNS0095607Whole white alabastrum(tetraploid) 120.132
CNS0095608Whole white alabastrum(tetraploid) 221.735
CNS0095609Whole white alabastrum(tetraploid) 344.976
CNS0095610Silvery flower (tetraploid) 141.614
CNS0095611Silvery flower (tetraploid) 235.492
CNS0095612Silvery flower (tetraploid) 350.491
CNS0095613Golden flower (tetraploid) 128.075
CNS0095614Golden flower (tetraploid) 239.766
CNS0095615Golden flower (tetraploid) 340.757
CRA001975CRR073297Stem 138.025
CRR073298Stem 234.975
CRR073299Stem 333.456
CRR073300Leaf 143.836
CRR073301Leaf 235.705
CRR073302Leaf 345.809
CRR073303Juvenile bud 136.896
CRR073304Juvenile bud 234.861
CRR073305Juvenile bud 338.159
CRR073306Third green 128.514
CRR073307Third green 226.891
CRR073308Third green 330.767
CRR073309Second white 129.656
CRR073310Second white 239.947
CRR073311Second white 338.848
CRR073312Silver flowering 143.720
CRR073313Silver flowering 235.626
CRR073314Silver flowering 342.318
CRR073315Gold flowering 118.255
CRR073316Gold flowering 223.480
CRR073317Gold flowering 319.519
CRR073318Tawny withering 128.151
CRR073319Tawny withering 228.761
CRR073320Tawny withering 334.764