Gene detail

Detail information of GWHGAAZE015131

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002263205.1	PREDICTED: PHD finger protein MALE MEIOCYTE DEATH 1 [Vitis vinifera]
Swissprot	tr\|Q7X6Y7\|MMD1_ARATH	PHD finger protein MALE MEIOCYTE DEATH 1
trEMBL	tr\|A5AHW0\|A5AHW0_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN73422.1}
TAIR10	AT1G66170.1	RING/FYVE/PHD zinc finger superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	25811698	25814368	-
GWHAAZE00000004	mRNA	25811698	25814368	-
GWHAAZE00000004	exon	25811698	25813309	-
GWHAAZE00000004	exon	25813461	25813703	-
GWHAAZE00000004	exon	25813962	25813986	-
GWHAAZE00000004	exon	25814074	25814368	-
GWHAAZE00000004	CDS	25814074	25814368	-
GWHAAZE00000004	CDS	25813962	25813986	-
GWHAAZE00000004	CDS	25813461	25813703	-
GWHAAZE00000004	CDS	25811698	25813309	-

Transcript Sequence
>GWHTAAZE015147 ATGCCGTTATCAATCTTGGAAGCTTGCAAGAAGAGGAAGAGAACCTCAAGATTCTATGGCTTCGACACATTTGCGGATCCAGGTTGCCCCATTTCCCCGTCGGGTCCCTTTCGAGACAATATCCGGTTCTTCCTCAAAGAATGTGCAGAGCTTGAGGATTACAATGTGGAAGGGATGCCAATTTGGTGCACTTTTCTGGTCCACGAGAACAGGGGATTTGTTGTTCCCCTTTACACCATTGAAGAGAGTGTTAAGCACTCTCTTGAACCTTTCTGCGATCAATGCAGATGCACTGAATTTAATTTGGGGGTTTTGGATTGGTTGGAGTCACCACTTGGTATCGGGCGTAAGTATCATATTATAATTCCTGTTGATGATGAGTGGAGTAAGCCTCTGAATGATGGGGTTTTTGATCTGCAAACCCATCTTTTACATGGGTTGATTCACTGTAATGGGTTCGGTCACTTGCTCTGTATCAATGGAATTGAAGGTGGATCTAAGTACTTGTGTGGTAGAGAAATCATGGATCTTTGGGACCGAATCTGCACAATTCTCCACACCCGGAAAATTACAGTGGAAGATGCCTCTAAAAAGAGGAAGATGGATCTTAGATTGCTTCATGGAGTGGCCTATGGGCACCCATGGTTTGGTAGATGGGGATACAGATTCTGCCATGGAAGCTTTGGAGTAACCGAGCCGAAATACGAAAGGGCAATCAATATTCTCAGCTGTTTAGAACTCGACACAGTCATCCACAATCTTCGCTGCTCAAATCAATGCCGGAATATCAAGCACATAATCTGTTGTTACCGTGATTTGAGTGAAACCCATTTGATCACCATAAGAGATCTCCTCAAATTCATGCTTGCCCTCAAACCCCAAGCTCCATTGAGGCGAAAATCACCAATGGCTTCCAATTTACCCTCTTGTTCGTCAAGATTTTCGACAAGAACGCCTCACACTAGGACCGTGACAAAAGCAAGATCCGTAAAGTACAGAAAATTTGCGAATGTTGCTGCTAAATTGGACAGTAGATGGCCTGTGAGGCGACTGGAATTTACCGCAAATGTCATTGTTGATGCTTTAAAAGAGAAAAAGGCAGAGAACAGATTTAGTAGTGCTGGAATGACCAGGCAAGAAGCTCGAGACGCTGCCCGCTTGCACATTGGCGATACAGGTCTTATAGATTATGTGCTGAAATCGATGAACAATGTAGTTGTTGGCGGCTACCTCATTCGTCGGGAGGTGAATCCATCTACTCGAATACTGGAGTACTCGATTCAAGAGATTGGGGATGGGGTTCGAGTTGACTCGGTGGTCGAGTTGGCCACTGGGCCGGTCCATGAACCGGCTCTACTACCTGGGTCTGATGTTTATAGCGATATGTCCTCTTTGTATGACAATGTACTGTTGGATAACCCAGGATCAGAAATGGTGGAATTGGCAGTTCAAACTGTTTTAGACAGCAAACACTTTGTGAAGGAGTGGCCTTTTAGGGATGAGGCTGATGAGTTACTCAGGTTCATTTGCCGGGTTTTGCCGAGTTCGAGTGACTCAGAGACTGAGTTGCGACCCGGTTGCCAGCCCGGTGAGTATGTGGTAGTCCCACTCCACGCCACAATTGGGGAGCTAAAACGCGAGTTGGAGAGAGCAATGAGGGATACTTATTGTACAATGGAGCAGCTTGTGGTGACAGATATTAAAGGGACTGAGGGAATGGAGGAAGGTGAGGTGATTTTTGGAGCGGTCGAGTCCGGTTCGGAGATTTGGGCTTGGGGGCAGGGGGTGGGGTTGGGGACCAAGCTGAAGTACGAGGGTGGGGCTGAGAACTGGACTGTACGGTGTAAGTGTGGGGCCCGGGATGATGATGGGGAGAGGATGATGGCATGTGATGTTTGTGAGACGTGGCAGCACACACGGTGCAGTGGGATTGATGACACTGAGGCGGTGCCGCCAATTTTTGTGTGCACTGCTTGTTGTGCAGCGCTCGTTGTGCCGCCTTCGGGGGGAGGAAGGCGGCAATGGCAGCCGAGGTTGGAGGCTGGGGCGGGTTTTGGGGACGAGTCGTCATTGGTGTATCCTTGGTCGGAGGAGATTGGTCGGGGAGAAAGTATGCTGAGTATGGTGTTTGATGGTGGTGTTAATGGTTCAATTTTGGGACATTGCGAGTCCTGA

Network for GWHGAAZE015131

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00628.30	PHD	614	660	3.00E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.031
	SRR3591707	mature leaf	0.051
	SRR3591708	Shoot apex	0.128
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.045
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.224
	SRR8316896	Juvenile bud stage	0.314
	SRR8316897	Juvenile bud stage	0.049
	SRR8316894	Third green stage	0.103
	SRR8316900	Third green stage	0.278
	SRR8316901	Third green stage	0.051
	SRR8316898	Complete white stage	0.040
	SRR8316899	Complete white stage	0.085
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.045
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.060
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.137
	SRR6706287	Light intensity 50%	0.041
	SRR6706288	Light intensity 20%	0.078
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.094
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.046
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.020
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.003
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.067
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.024
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.110
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.021
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.165
	CRR073298	Stem 2	0.105
	CRR073299	Stem 3	0.122
	CRR073300	Leaf 1	0.021
	CRR073301	Leaf 2	0.337
	CRR073302	Leaf 3	0.081
	CRR073303	Juvenile bud 1	0.152
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.185
	CRR073306	Third green 1	0.051
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.319
	CRR073310	Second white 2	0.099
	CRR073311	Second white 3	0.147
	CRR073312	Silver flowering 1	0.109
	CRR073313	Silver flowering 2	0.343
	CRR073314	Silver flowering 3	0.034
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.068
	CRR073317	Gold flowering 3	0.077
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000