Gene detail

Detail information of GWHGAAZE015150

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007032988.1	DNA repair protein xp-C / rad4, putative isoform 1 [Theobroma cacao]
trEMBL	tr\|A0A061ENL1\|A0A061ENL1_THECC	DNA repair protein xp-C / rad4, putative isoform 1 {ECO:0000313\|EMBL:EOY03914.1}
TAIR10	AT5G16630.2	DNA repair protein Rad4 family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	26320520	26331481	+
GWHAAZE00000004	mRNA	26320520	26331481	+
GWHAAZE00000004	exon	26320520	26320562	+
GWHAAZE00000004	exon	26321737	26321858	+
GWHAAZE00000004	exon	26322461	26322739	+
GWHAAZE00000004	exon	26322853	26322945	+
GWHAAZE00000004	exon	26323880	26323972	+
GWHAAZE00000004	exon	26324057	26324158	+
GWHAAZE00000004	exon	26326036	26326085	+
GWHAAZE00000004	exon	26326205	26326996	+
GWHAAZE00000004	exon	26328390	26328702	+
GWHAAZE00000004	exon	26329147	26329341	+
GWHAAZE00000004	exon	26329467	26329613	+
GWHAAZE00000004	exon	26330094	26330303	+
GWHAAZE00000004	exon	26331077	26331481	+
GWHAAZE00000004	CDS	26320520	26320562	+
GWHAAZE00000004	CDS	26321737	26321858	+
GWHAAZE00000004	CDS	26322461	26322739	+
GWHAAZE00000004	CDS	26322853	26322945	+
GWHAAZE00000004	CDS	26323880	26323972	+
GWHAAZE00000004	CDS	26324057	26324158	+
GWHAAZE00000004	CDS	26326036	26326085	+
GWHAAZE00000004	CDS	26326205	26326996	+
GWHAAZE00000004	CDS	26328390	26328702	+
GWHAAZE00000004	CDS	26329147	26329341	+
GWHAAZE00000004	CDS	26329467	26329613	+
GWHAAZE00000004	CDS	26330094	26330303	+
GWHAAZE00000004	CDS	26331077	26331481	+

Transcript Sequence
>GWHTAAZE015166 ATGAGAACCAGGAACCAGTCCCAGCCACACCCCCAATCAACTGGCACTCTTACTGACATCTCAAGAGATGCTGTCGACAAGCTTTTGAAAAGAGTTAATAAACGCGGTTCGCCAGGGTCGAAGAAGCAAGAAAGTCACCTTCGTCAATGTGATTCCATAAGCAAGGTGATTGGTACAATTGATACAAGCAAGACCTCGGAGGCAAATGGTTATGGTAGAGATGCGAGTGAAAATCCATCATCAGAACTGAAAGTTGATGGGGAAAACCCTGTTGAGGATGATGAAATGAATGATTCGGATTGGGAGGATGGATCAATTCCCGATTTGCATACCACAAACAATAATAATAGAGAGCATATAAACAAGGGTGTGACTATTGAATTTGATGCTTCACCTGATTCTGCAAAGCGGAAACCCATTCGACGAGCTTCTGCTGAGGAAAAGGAATTGGCTGGGCTTGTCCATAAGATTCATTTACTCTGTTTACTAGGACGAGGAAGGTTAATTGACTCAGCTTGTAATGATCCTCTTATTCAGGGTTCCTTAATGTCACTTCTACCAATATACTTGCTGAAGATATCAGAGGTCTCAAAACTTACTGCAAATGCTTTGGCTCCTCTAGTCAATTGGTTTCATAATAACTTCTGGAGTGGAAGTCCAAGCAGTACAGAGAGAACATTTCGTTCAGCTTTGGCATCTGCTATTGAGACCCGTGAAGGGAGTCCGGAGGAGATTGCTGCATTGTCTGTTGCACTATTCAGAGCTTTGAATCTTACTACTAGGTTTGTGTCCATTTTGGATGTGACCTCCTTGAAACCCGTTGCTGAAAAATCTGAACCAATTAGTCAAGAAAGGAGCAGAGCAGGTAAAGGGATATTTAACTCTTCAACGCTGATGGTGGAGCGGCCCAGTCAGGCTGATACATCTCCAGTTAAACAATCTGCACTTGTTGACAAGAAGAATGTAACCGAAAGTCCTTTAAAGGTTTCATGCAAAACTAAGGGTAGAAAGGCAACAACCAGCACCGCACATGTATCTGAAAGTCCTTTAAAGGGTTCATGCAAAACTAAGGGTGGAAAGGCAACAACCAGCACCACACAACTCAAAGATTCTCCGGTTGCACACCAGGTGAATGATATATCTGTGAAGAAATCCGAGGGATCAAAGAGGAAAGGGGATATTGAGTTTGATATGGAGTTACAGATGGCGCTTTCTGCCACAGCAGCTGGGTTTTCCAAGACCAGAATTGGATCAAACATGGAAGACTTGCATAGTAATTCATCAAAGCTCTCTTCTCCTCTTAAAAGAATGAAAAAAATCAAAAGCGAAGAATCTTCATCTTCCTCCCAGGGATTCTCAACTGCACTTGGATCGAGAAAAGTGGGGGCTCCTTTATACTGGGCTGAAGTGTACTGCAGTGGAGAGAACTTGATGGGTAAATGGGTACATGTTGATGCTGCCAATGCAATTATTGATGGAGAGCAGAAAGTAGAAGCTGCTGCAGCTGCATGTAAAACATCTTTGAGATATGCAGTTGCTTTTGCTGGACATGGGGCTAAAGATGTGACGCGCAGGTATTGTATGAATTGGTACAAGATTGCACCAAAAAGAGTTAATTCAATTTGGTGGGACGAGGTGTTGGCACCACTGAAAGAGTTGGAATCAAGAGCAACTGGAGGTGTGGTGCATTTGAAACAAGAGGCTTCCAAGGACCATGACAAGGTTGAAGCCTCTAAAGTATCTGGTCAATCAAATTTGCAAATGCTGAAAGGGAATGGTGGTCAGTCTTCTTCTGTGAGGAAATCCTTTGCTGCTACCAGGACCGATCTTGAGGATATGGAGTTGCAAACTAGGGCACTAACTGAACCTCTACCTACAAATCAACAGGCCTACAAAAACCATCAAGTGTATGCTCTTGAAAGATGGCTTACCAAATATCAGATACTTCACCCAAAGGGTCCTGTATTGGGTCTCTGTTCTGGTCATCCAGTTTACCCTCGAACTTGTGTGCAGACACTTCATACGAAAGAAAGATGGCTGCGCGAGGGGCTTCAACTCAAAGCCAATGAGCTTCCAGTGAAGGTGTTGAAGCGTTCCGTCAAAGCACAACAAGTTTGTGAACCTGATGATTATGGTGAGAAAGTTTGTGGTGGAACCGTTGATCTTTATGGGAAGTGGCAAACGGAACCCTTGACTTTGCCTCGTGCCGTTGATGGGATTGTGCCAAAGAATGAAAGGGGCCAAGTAGATGTGTGGAGTGAGAAGTGCCTTCCCCCGGGAACCGTCCACTTGAGGTTCCCAAGGATCTTTGCTATTGCGAAGAGGCTGGAAATTGATTATGCACCTGCTATGGTCGGATTTGAATTCAGAAATGGTCGGTCCATTCCTGTATATGATGGCATTGTGGTGTGTTCCGAGTTTAAGAACGCAATATTAGAGGCATACGAGGAAGAAGAGGAGAGAAGGGGAGCTGAAGAGAGAAAAAGGAACGAAACGCAAGCTATTTCTAGGTGGTACCAACTTCTTTCCTCCATTGTTACCCGTCAAAGGTTGAACAACCGCTATGGCGAAAGCGTGTCATCAAACACCCCTGAAAACGCGCACAAACCCAATGAAGAAACCCACGCACGTGCCAGTTGCAGTGAGAATAAAATGAATAAAATACAAACTCAAGGACCCGGGCACAAGAACAGAGGCAGTAACAAGCGGGACGCTGTGGCGCCGTTATCCACAAACGATCACGAGCACGTATATTTAGAAGATGATCAGACTTTTGATGAAGAGAGCTCCATTCGGACAAAGAGATGTCGATGTGGATTTTCAATTCAGGTGGTGGAGTTGTAG

Network for GWHGAAZE015150

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01841.20	Transglut_core	202	265	0.00018
PF03835.16	Rad4	438	613	1.20E-24
PF10403.10	BHD_1	621	670	8.10E-16
PF10404.10	BHD_2	674	734	5.50E-11
PF10405.10	BHD_3	741	813	1.00E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10838	XPC	Nucleotide excision repair	map03420

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.810
	SRR3591706	second leaf	4.650
	SRR3591707	mature leaf	6.220
	SRR3591708	Shoot apex	10.345
	SRR3591709	Stem	8.090
	SRR3591710	White floral bud	8.836
	SRR3591711	White flower	9.862
	SRR3591712	Green floral bud	6.844
	SRR3591713	Yellow flower	8.150
SRP173429	SRR8316895	Juvenile bud stage	5.191
	SRR8316896	Juvenile bud stage	8.766
	SRR8316897	Juvenile bud stage	2.988
	SRR8316894	Third green stage	3.055
	SRR8316900	Third green stage	7.027
	SRR8316901	Third green stage	6.784
	SRR8316898	Complete white stage	1.836
	SRR8316899	Complete white stage	7.569
	SRR8316903	Complete white stage	3.598
	SRR8316902	Silver flowering stage	1.973
	SRR8316904	Silver flowering stage	2.065
	SRR8316905	Silver flowering stage	1.299
	SRR8316906	Gold flowering stage	3.393
	SRR8316907	Gold flowering stage	3.718
	SRR8316908	Gold flowering stage	3.148
SRP132670	SRR6706286	Control	6.204
	SRR6706287	Light intensity 50%	6.071
	SRR6706288	Light intensity 20%	6.641
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.828
	CNS0095593	Slightly white alabastrum(diploid) 2	3.811
	CNS0095594	Slightly white alabastrum(diploid) 3	5.811
	CNS0095595	Whole white alabastrum(diploid) 2	4.399
	CNS0095596	Whole white alabastrum(diploid) 3	4.485
	CNS0095597	Whole white alabastrum(diploid) 4	3.484
	CNS0095598	Silvery flower (diploied) 1	4.874
	CNS0095599	Silvery flower (diploied) 2	3.918
	CNS0095600	Silvery flower (diploied) 3	4.928
	CNS0095601	Golden flower (diploid) 1	6.905
	CNS0095602	Golden flower (diploid) 2	6.453
	CNS0095603	Golden flower (diploid) 3	6.063
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.667
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.485
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.985
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.600
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.627
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.256
	CNS0095610	Silvery flower (tetraploid) 1	3.869
	CNS0095611	Silvery flower (tetraploid) 2	5.406
	CNS0095612	Silvery flower (tetraploid) 3	2.283
	CNS0095613	Golden flower (tetraploid) 1	1.678
	CNS0095614	Golden flower (tetraploid) 2	2.679
	CNS0095615	Golden flower (tetraploid) 3	1.691
CRA001975	CRR073297	Stem 1	10.780
	CRR073298	Stem 2	10.305
	CRR073299	Stem 3	8.728
	CRR073300	Leaf 1	8.229
	CRR073301	Leaf 2	7.894
	CRR073302	Leaf 3	6.049
	CRR073303	Juvenile bud 1	6.259
	CRR073304	Juvenile bud 2	3.464
	CRR073305	Juvenile bud 3	7.519
	CRR073306	Third green 1	1.125
	CRR073307	Third green 2	0.462
	CRR073308	Third green 3	1.162
	CRR073309	Second white 1	1.411
	CRR073310	Second white 2	0.919
	CRR073311	Second white 3	2.014
	CRR073312	Silver flowering 1	0.959
	CRR073313	Silver flowering 2	1.678
	CRR073314	Silver flowering 3	1.127
	CRR073315	Gold flowering 1	2.416
	CRR073316	Gold flowering 2	4.781
	CRR073317	Gold flowering 3	2.754
	CRR073318	Tawny withering 1	5.447
	CRR073319	Tawny withering 2	3.449
	CRR073320	Tawny withering 3	3.861