Detail information of GWHGAAZE015157


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP33173.10hypothetical protein JCGZ_13438 [Jatropha curcas]
Swissprottr|P93736|SYV_ARATH0Valine--tRNA ligase
trEMBLtr|A0A067KDU4|A0A067KDU4_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP33173.1}
TAIR10AT5G16715.10ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2642301626436922-
GWHAAZE00000004mRNA2642301626436922-
GWHAAZE00000004exon2643678726436922-
GWHAAZE00000004exon2643529826435382-
GWHAAZE00000004exon2643492826435054-
GWHAAZE00000004exon2643453726434620-
GWHAAZE00000004exon2643408026434174-
GWHAAZE00000004exon2643383126433922-
GWHAAZE00000004exon2643354626433599-
GWHAAZE00000004exon2643317226433224-
GWHAAZE00000004exon2643300826433075-
GWHAAZE00000004exon2643234826432414-
GWHAAZE00000004exon2643187726431996-
GWHAAZE00000004exon2643108726431170-
GWHAAZE00000004exon2643077926430885-
GWHAAZE00000004exon2643056926430686-
GWHAAZE00000004exon2643010326430219-
GWHAAZE00000004exon2642941426429634-
GWHAAZE00000004exon2642837326428462-
GWHAAZE00000004exon2642814826428259-
GWHAAZE00000004exon2642747126427581-
GWHAAZE00000004exon2642725126427388-
GWHAAZE00000004exon2642708226427132-
GWHAAZE00000004exon2642688626426998-
GWHAAZE00000004exon2642660426426751-
GWHAAZE00000004exon2642621526426319-
GWHAAZE00000004exon2642360526423706-
GWHAAZE00000004exon2642301626423102-
GWHAAZE00000004CDS2643678726436922-
GWHAAZE00000004CDS2643529826435382-
GWHAAZE00000004CDS2643492826435054-
GWHAAZE00000004CDS2643453726434620-
GWHAAZE00000004CDS2643408026434174-
GWHAAZE00000004CDS2643383126433922-
GWHAAZE00000004CDS2643354626433599-
GWHAAZE00000004CDS2643317226433224-
GWHAAZE00000004CDS2643300826433075-
GWHAAZE00000004CDS2643234826432414-
GWHAAZE00000004CDS2643187726431996-
GWHAAZE00000004CDS2643108726431170-
GWHAAZE00000004CDS2643077926430885-
GWHAAZE00000004CDS2643056926430686-
GWHAAZE00000004CDS2643010326430219-
GWHAAZE00000004CDS2642941426429634-
GWHAAZE00000004CDS2642837326428462-
GWHAAZE00000004CDS2642814826428259-
GWHAAZE00000004CDS2642747126427581-
GWHAAZE00000004CDS2642725126427388-
GWHAAZE00000004CDS2642708226427132-
GWHAAZE00000004CDS2642688626426998-
GWHAAZE00000004CDS2642660426426751-
GWHAAZE00000004CDS2642621526426319-
GWHAAZE00000004CDS2642360526423706-
GWHAAZE00000004CDS2642301626423102-
Transcript Sequence

Network for GWHGAAZE015157

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00133.23tRNA-synt_1713373.70E-80
PF00133.23tRNA-synt_13546521.10E-105
PF08264.14Anticodon_17098523.90E-40
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01873VARS, valS Aminoacyl-tRNA biosynthesis map00970

Gene Ontology

GO term OntologyName
GO:0006438biological_processvalyl-tRNA aminoacylation
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0000166molecular_functionnucleotide binding
GO:0004832molecular_functionvaline-tRNA ligase activity
GO:0005524molecular_functionATP binding
GO:0002161molecular_functionaminoacyl-tRNA editing activity
GO:0004812molecular_functionaminoacyl-tRNA ligase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.171
SRR3591706second leaf15.956
SRR3591707mature leaf10.193
SRR3591708Shoot apex15.007
SRR3591709Stem6.803
SRR3591710White floral bud8.768
SRR3591711White flower8.663
SRR3591712Green floral bud7.802
SRR3591713Yellow flower6.634
SRP173429 SRR8316895Juvenile bud stage 7.139
SRR8316896Juvenile bud stage 7.646
SRR8316897Juvenile bud stage 4.081
SRR8316894Third green stage 3.799
SRR8316900Third green stage 10.971
SRR8316901Third green stage 8.484
SRR8316898Complete white stage 2.967
SRR8316899Complete white stage 7.547
SRR8316903Complete white stage 4.402
SRR8316902Silver flowering stage2.688
SRR8316904Silver flowering stage4.896
SRR8316905Silver flowering stage2.797
SRR8316906Gold flowering stage 8.878
SRR8316907Gold flowering stage 8.062
SRR8316908Gold flowering stage 5.772
SRP132670SRR6706286Control12.260
SRR6706287Light intensity 50%12.872
SRR6706288Light intensity 20%15.444
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.500
CNS0095593Slightly white alabastrum(diploid) 23.594
CNS0095594Slightly white alabastrum(diploid) 33.147
CNS0095595Whole white alabastrum(diploid) 23.304
CNS0095596Whole white alabastrum(diploid) 33.365
CNS0095597Whole white alabastrum(diploid) 42.956
CNS0095598Silvery flower (diploied) 14.910
CNS0095599Silvery flower (diploied) 24.843
CNS0095600Silvery flower (diploied) 311.755
CNS0095601Golden flower (diploid) 15.842
CNS0095602Golden flower (diploid) 211.047
CNS0095603Golden flower (diploid) 39.019
CNS0095604Slightly white alabastrum(tetraploid) 16.016
CNS0095605Slightly white alabastrum(tetraploid) 24.465
CNS0095606Slightly white alabastrum(tetraploid) 313.050
CNS0095607Whole white alabastrum(tetraploid) 13.776
CNS0095608Whole white alabastrum(tetraploid) 22.573
CNS0095609Whole white alabastrum(tetraploid) 311.814
CNS0095610Silvery flower (tetraploid) 18.401
CNS0095611Silvery flower (tetraploid) 210.724
CNS0095612Silvery flower (tetraploid) 311.562
CNS0095613Golden flower (tetraploid) 13.020
CNS0095614Golden flower (tetraploid) 27.975
CNS0095615Golden flower (tetraploid) 34.572
CRA001975CRR073297Stem 112.576
CRR073298Stem 211.130
CRR073299Stem 39.346
CRR073300Leaf 111.657
CRR073301Leaf 27.791
CRR073302Leaf 37.707
CRR073303Juvenile bud 17.216
CRR073304Juvenile bud 25.303
CRR073305Juvenile bud 38.419
CRR073306Third green 12.249
CRR073307Third green 21.036
CRR073308Third green 31.847
CRR073309Second white 15.725
CRR073310Second white 24.335
CRR073311Second white 35.553
CRR073312Silver flowering 13.111
CRR073313Silver flowering 23.992
CRR073314Silver flowering 32.489
CRR073315Gold flowering 16.645
CRR073316Gold flowering 213.855
CRR073317Gold flowering 37.607
CRR073318Tawny withering 12.747
CRR073319Tawny withering 22.989
CRR073320Tawny withering 33.077