Gene detail

Detail information of GWHGAAZE015170

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010659133.1	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
Swissprot	tr\|Q9LP24\|Y1571_ARATH	Probable leucine-rich repeat receptor-like protein kinase At1g35710 (Precursor)
trEMBL	tr\|K7K0X1\|K7K0X1_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA0090S00350.1}
TAIR10	AT1G35710.1	Protein kinase family protein with leucine-rich repeat domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	26857740	26862236	+
GWHAAZE00000004	mRNA	26857740	26862236	+
GWHAAZE00000004	exon	26857740	26861732	+
GWHAAZE00000004	exon	26861931	26862236	+
GWHAAZE00000004	CDS	26857740	26861732	+
GWHAAZE00000004	CDS	26861931	26862236	+

Transcript Sequence
>GWHTAAZE015186 ATGGCTTCTAGTACTTTTCAAAAGTCTTTCTTATTCACTTTACTCTCAACCATTTTTATCATAGTATTCCTTTCACCAAATGTTGCTTCTTCTTCCTTATCTACTAATGAAGCAGTGGCTCTCCTTCGATGGAAATCAAGCCTTTTAAGCCTAAACAAGTCCATAGAAACTTCATGGACTCTTCCTTCTAATAACACCACCAATTCTTCTCCCCATTCCCAAAAAAACATGAGCCATTGCTCTTGGCTTGGCGTTTCATGCATTGAAGGAAGCATAATCCGATTAAACCTTTCGATGACAGGTTTAAAAGGTACGCTGTACAACTTTTCTTTCTCGTCCTTCCCAAATCTGACCTACTTTGAACTCAGCATTAATGAACTCAGCGGTAGTATTCCCCGACAGATTAGTACTCTGTCAAAGCTCAAGTATCTCAATTTTTCGCAAAATCTTTTTTCGGGTTTCATACCCCCGGAGATTGGGTTTTTAACGAATCTTGAGATTCTTAATTTATATGAAAATCAACTCAGTGGCTCAATTCCTCCTGAGACAGGCCAGCTAAAGTCTCTCTATGAGCTCTGGTTGTCCACAAACTCCCTTGAAGGACCAATTCCTTCTTCTATCGGCAATTTGAGCAACTTAGCTACGCTATATCTCCACAAGAATAAACTTTCGGGTATCATCCCACCGGAGATTGGACTTTTAACAAAGCTGAAGATCCTTTCTTTATATGAAAATCAACTCACTGGCTCGATTCTTCCAGAGATAGGCCACTTAAAATATCTCAATGTGCTCTGGTTGTCCACAAACAACCTTGAAGGACCAATTCCTTCTTCTGTTGGCAATTTGAGCAACTTAGCTTCGCTATATCTCGACGAGAATAAACTTTCGGGTACTATCCCACCGGAGATTGGACTTTTAACGAAGCTGAAAAACCTTTCTTTATACGAAAATCAACTCAGTGGCTCAATTCCTCCTGAGATAGGCCAGCTAAAGTCTCTCTGTGAGCTCTGGTTGTTCACAAACTCCCTTGAAGGACCAATTCCTTCTTCTATCGGCAATTTGAGCAGCTTAGCTACGCTATATCTCCACAAGAATAAAATTTCGGGTATCATCCCACCGAAGATTGGACTTTTAACGAAGCTGAAGGTCCTTTCTTTATTTCAAAATCAACTCACTGGCTCGATTCTTCCAGAGATAGGCCATTTAAAATATCTCAATATACTCTGGTTGTCCACAAACTCCCTTGAAGGACCAATTCCTTCTTCTGTTGGCAATTTGAGCAACTTAGCTTCGCTATATCTCGGCGAGAATAAACTTTCGGGTATTATCCCACCGGAGATTGGACTTTTAACGAAGCTGAAGAACCTTTCTCTATATGAAAATCAACTCACTGGCTTGATTCCCCCAGAGATAGGCCAATTAAAGTATCTCTATTTGCTCGTGTTGTCCACAAACTCCCTTGAAGGACCAATTCCTTCTTCTATCGGCAATTTGAGCAACTTAGCTTTGCTCTATCTCAACGAGAATAAACTTTCAAGCTCTATTCCTCAAGACATGGGCCAACTAAAGTCTCTCTACGGTCTCCAACTATGGAAAAATTCTCTTGAAGGACCAATTCCTTCTTCTATCGGCAATTTCAGCAACTTAGTTTTTCTCTATCTCAACGAGAATAAACTTTCGGGTATCATCCCACCGGAGATTGGACTTTTAACGAAGCTGAAGAACCTTTCTTTATATGAAAATCAACTCACTGGCTCGATTCCTCTAGAGATAGGCCACTTAAAATATCTCAATGTGCTCTGGTTGTCCACAAACTCCCTTGAAGGACCAATTCCTTCTTTTGTTGGCAATTTGAGCAACTTAGCTTCGCTATATCTCGGCGAGAATAAACTTTCGGGTATTATCCCATCGGAGATTGGACTTTTAACGAAGCTGAAGAACCTTTCTTTAGGTGAAAATCAACTCACTGGCTCGATTCCTCCAGAGATAGGCCAATTAAAGCATCTCAATTTGCTCTCGTTGTCCACAAACTCCCTTGAAGGACCAATTCCTTCTTCTGTTGGCAATTTGAGCAACTTAGCTTCGCTATATCTCTGCGACAATAAACTTTCAAGCTCTATTCCTCAAGAGATGGGCCAACTAAAGTCTCTCTACGATCTCCAACTATGCAAAAATTCTCTTGAAGGACCAATTCCTTCTTCTATTGGCAATTTGAGCAATTTAGCTATGCTCTATCTCTACGAGAATAAACTTTCGGGTATCATCCCACCGGAGATTGGACTTTTAACAAAGCTGGAGGTGCTTTCTTTAAATCAAAATCAACTCACTGGCTTAATTCCTTCAGAGATAGGCCAATTAAAGTCTCTTTATTTCCTCGGTTTATCCATAAACTTCCTTGAAGGACCAATTCCTTCTTCTATTTGCAGTTTATTCAACTTAAATGTTCTCACTGTGAACGACAACCAACTAATTGGTCAAGTCACCAAAAGCTTCAGAAATTTCTCGAGTTTAGTTAGAATCCGTCTTGACAGTAACAAGCTCACTGGAAATATATCTGAAGTTTTTGGCGTTTATCCGAAATTACAATTCGTGAATGTAAGTGATAATGAATTTTACGGGGAGATTTCGGATAATTGGAGTCGTTGCAAACAGTTGACAAATTTGCGGATCGGGAAGAACAATCTAGGAAGTAGTATACCAACGTCGTTTGGAAATTCTACCCAACTATGTGAACTTGATCTTTCTTCAAATCATTTAATTGGGAAGATTCCTAAGGAATTTGGGAAACTAAAGTGTTTACAAAAGTTGTTTTTGAGTGATAACAAACTTTCTGGCTCTGTACCTCAGGAACTTGTCTGGTTGAGCGAATTGTTGTATCTTGATCTATCGGTGAATAAATTGAGTGGGACTATACAAGGAGTTCTTGGGGACTACTTGCATCTGTTCTATTTGAACTTAAGCAATAATCAATTTGGTGGGGAAATTCCAATTCAGATTATGAAACTAGTCCAACTTTCGGTGCTTGATTTAAGTCATAACTCATTCTCAGGCAAAATTCCGTCTCAGTTTGAAAGTTTGGAGAATTTAGTTTCTATTAACATATCATATAATAAATTGCAGGGTCCCATACCGAACAATAAAGCTTTTATGAGTGCTTCCATAGATGAATTACGAGGAAATCGAGGTTTGTGTGGAAATATTACAGGATTACAGCTCTGTCAAAATCATTCAATGGGGTCTCAGCATAACGTGAATAAGAGCCAGAAACTAGCCTTTATAATCGGACTCCCTATTTTGGGATCAATTTTACTTCTCGGTGCATTCATTGGGGTCTTGATGGCGTATGAGATAATAAAAAGAAAAAAGGAAGCCGAAAACAAAAGCAAAAGGGTTGCCAAAAACACTAGTAAAGAATATAAAGTTTTGTTTTCCACGTTGACGTTTGATGGAAGAAAAACTTATGATGAAATCATAACAGCCACAGAAGATTTTAACACTCGATATTGCATTGGAAGAGGAAGATTTGGAAGTGTTTACAAAGCTCTACTCTCCTCGGGTAGTATTGTAGCTGTGAAGAAGCTTCATTCAATATTGGATACGGTTGACCGAAAAGACTTTTTAAACGAGGTGAGAGCTTTGACTGAGATAAAGCACCGTAATATTGTGAAGCTTTATGGATTTTGTTCACATGCTCGACATGAGTTTTTGATATATGAGTACCTCGAAAGAGGTAGCTTGGCATCAATATTAAGCAATGAAGAAGATGCAAAGGAGCTGGATTGGACTAAGAGGGTAAATCTCATTAAGGATGTCGCTTATGCTTTGTCTTACATGCACCATGATTACGCCACGCCAATTGTTCATCGAGACGTATCAAGCAAGAATATATTGCTTGATTCTGCATACAAGGCTAGTGTTTCGGATTTTGGCACTGCCAAGTTTCTAAATCCAGACTCTTCCAATTGGACCGCATTTGCAGGCACTTATGGATACGTAACTGAAAAATGCGACGTGTATAGTTTTGGTGTGCTAGCACTAGAAGTGATCAAAGGGAACCATCCCGGTGACTTAATCGACACTCTTTTATGTTCATCTACCAAGGAGATACAGCTGAAAGATATGGTCGACCAACGCATTCCATTACCCTCACTTGGAGTTGAGGAGGTAGTGATATCTATCATTAAAACGGCGAGAACCTGTTTAAATGCCAATCCACAATCCAGGCCAACGATGCTTGTTGTTTCTCAGTTGTTATCGACTCGAACAACAAACCTATTTGAGATTCATGTTGAAGAATAA

Network for GWHGAAZE015170

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	716	775	1.20E-07
PF13855.7	LRR_8	884	943	1.90E-09
PF07714.18	PK_Tyr_Ser-Thr	1169	1415	1.90E-38

Protein Sequence

>GWHPAAZE015178
MASSTFQKSFLFTLLSTIFIIVFLSPNVASSSLSTNEAVALLRWKSSLLSLNKSIETSWTLPSNNTTNSSPHSQKNMSHCSWLGVSCIEGSIIRLNLSMTGLKGTLYNFSFSSFPNLTYFELSINELSGSIPRQISTLSKLKYLNFSQNLFSGFIPPEIGFLTNLEILNLYENQLSGSIPPETGQLKSLYELWLSTNSLEGPIPSSIGNLSNLATLYLHKNKLSGIIPPEIGLLTKLKILSLYENQLTGSILPEIGHLKYLNVLWLSTNNLEGPIPSSVGNLSNLASLYLDENKLSGTIPPEIGLLTKLKNLSLYENQLSGSIPPEIGQLKSLCELWLFTNSLEGPIPSSIGNLSSLATLYLHKNKISGIIPPKIGLLTKLKVLSLFQNQLTGSILPEIGHLKYLNILWLSTNSLEGPIPSSVGNLSNLASLYLGENKLSGIIPPEIGLLTKLKNLSLYENQLTGLIPPEIGQLKYLYLLVLSTNSLEGPIPSSIGNLSNLALLYLNENKLSSSIPQDMGQLKSLYGLQLWKNSLEGPIPSSIGNFSNLVFLYLNENKLSGIIPPEIGLLTKLKNLSLYENQLTGSIPLEIGHLKYLNVLWLSTNSLEGPIPSFVGNLSNLASLYLGENKLSGIIPSEIGLLTKLKNLSLGENQLTGSIPPEIGQLKHLNLLSLSTNSLEGPIPSSVGNLSNLASLYLCDNKLSSSIPQEMGQLKSLYDLQLCKNSLEGPIPSSIGNLSNLAMLYLYENKLSGIIPPEIGLLTKLEVLSLNQNQLTGLIPSEIGQLKSLYFLGLSINFLEGPIPSSICSLFNLNVLTVNDNQLIGQVTKSFRNFSSLVRIRLDSNKLTGNISEVFGVYPKLQFVNVSDNEFYGEISDNWSRCKQLTNLRIGKNNLGSSIPTSFGNSTQLCELDLSSNHLIGKIPKEFGKLKCLQKLFLSDNKLSGSVPQELVWLSELLYLDLSVNKLSGTIQGVLGDYLHLFYLNLSNNQFGGEIPIQIMKLVQLSVLDLSHNSFSGKIPSQFESLENLVSINISYNKLQGPIPNNKAFMSASIDELRGNRGLCGNITGLQLCQNHSMGSQHNVNKSQKLAFIIGLPILGSILLLGAFIGVLMAYEIIKRKKEAENKSKRVAKNTSKEYKVLFSTLTFDGRKTYDEIITATEDFNTRYCIGRGRFGSVYKALLSSGSIVAVKKLHSILDTVDRKDFLNEVRALTEIKHRNIVKLYGFCSHARHEFLIYEYLERGSLASILSNEEDAKELDWTKRVNLIKDVAYALSYMHHDYATPIVHRDVSSKNILLDSAYKASVSDFGTAKFLNPDSSNWTAFAGTYGYVTEKCDVYSFGVLALEVIKGNHPGDLIDTLLCSSTKEIQLKDMVDQRIPLPSLGVEEVVISIIKTARTCLNANPQSRPTMLVVSQLLSTRTTNLFEIHVEE

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.048
	SRR3591707	mature leaf	0.326
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.060
	SRR3591710	White floral bud	0.173
	SRR3591711	White flower	0.180
	SRR3591712	Green floral bud	0.098
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.075
	SRR8316896	Juvenile bud stage	0.112
	SRR8316897	Juvenile bud stage	0.134
	SRR8316894	Third green stage	0.107
	SRR8316900	Third green stage	0.128
	SRR8316901	Third green stage	0.032
	SRR8316898	Complete white stage	0.040
	SRR8316899	Complete white stage	0.150
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.015
	SRR8316906	Gold flowering stage	0.041
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.009
SRP132670	SRR6706286	Control	0.047
	SRR6706287	Light intensity 50%	0.038
	SRR6706288	Light intensity 20%	0.032
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.102
	CNS0095593	Slightly white alabastrum(diploid) 2	0.008
	CNS0095594	Slightly white alabastrum(diploid) 3	0.041
	CNS0095595	Whole white alabastrum(diploid) 2	0.031
	CNS0095596	Whole white alabastrum(diploid) 3	0.036
	CNS0095597	Whole white alabastrum(diploid) 4	0.080
	CNS0095598	Silvery flower (diploied) 1	0.297
	CNS0095599	Silvery flower (diploied) 2	0.163
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.186
	CNS0095602	Golden flower (diploid) 2	0.017
	CNS0095603	Golden flower (diploid) 3	0.116
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.074
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.159
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.364
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.031
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.054
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.012
	CNS0095610	Silvery flower (tetraploid) 1	0.019
	CNS0095611	Silvery flower (tetraploid) 2	0.138
	CNS0095612	Silvery flower (tetraploid) 3	0.053
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.021
	CNS0095615	Golden flower (tetraploid) 3	0.001
CRA001975	CRR073297	Stem 1	0.058
	CRR073298	Stem 2	0.147
	CRR073299	Stem 3	0.037
	CRR073300	Leaf 1	0.041
	CRR073301	Leaf 2	0.099
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.004
	CRR073307	Third green 2	0.003
	CRR073308	Third green 3	0.073
	CRR073309	Second white 1	0.053
	CRR073310	Second white 2	0.001
	CRR073311	Second white 3	0.001
	CRR073312	Silver flowering 1	0.010
	CRR073313	Silver flowering 2	0.014
	CRR073314	Silver flowering 3	0.022
	CRR073315	Gold flowering 1	1.250
	CRR073316	Gold flowering 2	3.940
	CRR073317	Gold flowering 3	1.109
	CRR073318	Tawny withering 1	0.122
	CRR073319	Tawny withering 2	0.027
	CRR073320	Tawny withering 3	0.028