Gene detail

Detail information of GWHGAAZE015180

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	BAD12175.1	4.1952E-84	14-3-3 d-2-AS protein [Nicotiana tabacum]
Swissprot	tr\|O49996\|1433D_TOBAC	8E-86	14-3-3-like protein D
trEMBL	tr\|Q75ZE1\|Q75ZE1_TOBAC	2E-84	14-3-3 d-2-AS protein {ECO:0000313\|EMBL:BAD12175.1}
TAIR10	AT5G65430.1	8E-66	general regulatory factor 8

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	27139664	27142078	+
GWHAAZE00000004	mRNA	27139664	27142078	+
GWHAAZE00000004	exon	27139664	27140173	+
GWHAAZE00000004	exon	27141330	27141452	+
GWHAAZE00000004	exon	27141953	27142078	+
GWHAAZE00000004	CDS	27139664	27140173	+
GWHAAZE00000004	CDS	27141330	27141452	+
GWHAAZE00000004	CDS	27141953	27142078	+

Transcript Sequence
>GWHTAAZE015196 ATGGCCTCTGCTGCAGTACCGGAGGATACCAACATGCCAAGACACCATTGCCTCTACATGGCCAAACTCGCCGATCAAGCCGAACAATACAACGATATGGCAAAATTCATGTCCGAAATCATCACCAACCACTCTGCCAATCTCACCCTCGAGGAGCGGACTCTCTTCTCCGGTGCCTACAAGAAAGTGGTCGACTCGCTCCGAGAAGGATGCAGAATCGCGTCATTTAACGAGCACAAGGAATTGGGTCGAGTTGATGAGGACTGTGCACGGATGGCGCGGTTGTATGGGTCGTTGGTTGGATCGCGACTGGCGGAGGTTTGTGCTGGGGTTTTGGATTTGCTGGATATGCGTTTGATACCGGCGGTGGAGGTGGATGAGGAGAGTGAGGGGAAGGTTTATTATATGAAGATGAAGGGGGATTATTATCGGTACCTTGCGGAGGTTAAGAACGGTGAGGAGAGGAGTGTGGCTGTTGAGAAGGCTTTGCATGCTTACACTGCTGCTGAGGATATTGCACTGGCTGAACTAGCTTCAACACACCCGACAAGGCTGGGTTTGGCTGCCAATTTCTCACTTTTCTACTTTGAGATCCTAAATTTACCAGACTTGGCTTGCAGCATGGCTAAAGAGGCCTATAAGGATGCAATGGCTGAGATAGATAACGAGGATTTATGCAATGAAAGTACTCTGATCATGCAACTCATAAGGGATAATTTCAATCTTTGGAATTCAGACGAAATTTATTCATCATTTTAG

Network for GWHGAAZE015180

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00244.21	2014/3/3	20	244	1.00E-71

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06630	YWHAE	MAPK signaling pathway - yeast	map04011
		Hippo signaling pathway	map04390
		Hippo signaling pathway - fly	map04391
		PI3K-Akt signaling pathway	map04151
		Cell cycle	map04110
		Oocyte meiosis	map04114
		NOD-like receptor signaling pathway	map04621
		Neurotrophin signaling pathway	map04722

Gene Ontology

GO term	Ontology	Name
GO:0019904	molecular_function	protein domain specific binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.248
	SRR3591706	second leaf	0.253
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.370
	SRR3591709	Stem	2.169
	SRR3591710	White floral bud	0.111
	SRR3591711	White flower	0.388
	SRR3591712	Green floral bud	0.123
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	4.060
	SRR8316896	Juvenile bud stage	5.756
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.276
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.072
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.681
	SRR8316907	Gold flowering stage	0.269
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.069
	SRR6706288	Light intensity 20%	0.090
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.177
	CNS0095593	Slightly white alabastrum(diploid) 2	0.315
	CNS0095594	Slightly white alabastrum(diploid) 3	1.774
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.051
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.087
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.206
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.249
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.061
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.059
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.214
	CNS0095611	Silvery flower (tetraploid) 2	0.170
	CNS0095612	Silvery flower (tetraploid) 3	1.187
	CNS0095613	Golden flower (tetraploid) 1	0.096
	CNS0095614	Golden flower (tetraploid) 2	0.053
	CNS0095615	Golden flower (tetraploid) 3	0.233
CRA001975	CRR073297	Stem 1	2.254
	CRR073298	Stem 2	1.243
	CRR073299	Stem 3	0.893
	CRR073300	Leaf 1	0.036
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.059
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.067
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.125
	CRR073319	Tawny withering 2	0.589
	CRR073320	Tawny withering 3	0.000