Gene detail

Detail information of GWHGAAZE015194

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006343065.1	3.693E-66	PREDICTED: proline-rich receptor-like protein kinase PERK1-like isoform X2 [Solanum tuberosum]
Swissprot	tr\|Q9LV48\|PERK1_ARATH	2E-55	Proline-rich receptor-like protein kinase PERK1
trEMBL	tr\|M0ZRH8\|M0ZRH8_SOLTU	1E-66	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400006516}
TAIR10	AT3G24550.1	2E-48	proline extensin-like receptor kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	27620186	27622744	+
GWHAAZE00000004	mRNA	27620186	27622744	+
GWHAAZE00000004	exon	27620186	27620453	+
GWHAAZE00000004	exon	27622278	27622744	+
GWHAAZE00000004	CDS	27620186	27620453	+
GWHAAZE00000004	CDS	27622278	27622744	+

Transcript Sequence
>GWHTAAZE015210 ATGGGAATCCCGGACATGTCCGACCCTCCGGAGGACGACTCCCCACCTTCGGATTTCGACGATGACCCCCCACCTTCGGATATCGACGACAACCTTCCCTCGCCGGATATTGCAGGCTTTCCATCTAGAATTTGGATTTTCATCGTGGTCGGAGTTGGGATTGTGTTGCTTATAGTGGGCATTTTTATCTTCTGGTATAAGAGGAGGAAGCGACGCCGTGGGCAGGGAGGTTCCTATGACCATGAAGCACCTCCACAAGGCTCTACAGATGTCCTTGTTGATGGTCAATGTCAACATTTGCAGCAGAGTGCCAATTTATATACAATGGGTGGCCCACCACCACCTTCAGTAACCAGTAGCTCAAGCTCCGAGAACCAACTTCGACGACCATCAACTCAATTTGGTTTTGGTTTCTTGAACAGCACATTTACATATGAAGAACTAGCCCTAGCTACAGATGGTTTCTCCAACACCAACCTCCTCGGTCAAGGGGGTTTTGGGTATGTTCATAAAGGAGTCCTTCCGGATGGGAAAGAGGTTGCAATTAAGCAGCTAAAAGTTGGTAGTGGGCAAGGGGAGCGTGAATTTCAGGCTGAAGTGGAGATTATTAGTCGTGTTAATCATAATCATCTTGTTTCACTAGTAGGATACTGTAGTTCTGGAGCTCAGAGAATACTAGTTTATGAGTTTGTTCCAAACAACACCATGGAGTTCCATTTACACGGTGCACCCTAA

Network for GWHGAAZE015194

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	158	241	3.70E-13

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_PERK-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.821
	SRR3591706	second leaf	26.823
	SRR3591707	mature leaf	33.375
	SRR3591708	Shoot apex	9.346
	SRR3591709	Stem	83.566
	SRR3591710	White floral bud	0.626
	SRR3591711	White flower	0.975
	SRR3591712	Green floral bud	1.119
	SRR3591713	Yellow flower	0.743
SRP173429	SRR8316895	Juvenile bud stage	0.464
	SRR8316896	Juvenile bud stage	1.152
	SRR8316897	Juvenile bud stage	7.953
	SRR8316894	Third green stage	1.207
	SRR8316900	Third green stage	0.532
	SRR8316901	Third green stage	1.008
	SRR8316898	Complete white stage	0.298
	SRR8316899	Complete white stage	1.854
	SRR8316903	Complete white stage	0.713
	SRR8316902	Silver flowering stage	0.135
	SRR8316904	Silver flowering stage	0.298
	SRR8316905	Silver flowering stage	0.034
	SRR8316906	Gold flowering stage	1.627
	SRR8316907	Gold flowering stage	0.093
	SRR8316908	Gold flowering stage	8.067
SRP132670	SRR6706286	Control	1.659
	SRR6706287	Light intensity 50%	2.334
	SRR6706288	Light intensity 20%	1.719
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.739
	CNS0095593	Slightly white alabastrum(diploid) 2	0.023
	CNS0095594	Slightly white alabastrum(diploid) 3	0.413
	CNS0095595	Whole white alabastrum(diploid) 2	0.122
	CNS0095596	Whole white alabastrum(diploid) 3	0.042
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	1.086
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.568
	CNS0095602	Golden flower (diploid) 2	0.272
	CNS0095603	Golden flower (diploid) 3	0.265
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.440
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.157
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.847
	CNS0095610	Silvery flower (tetraploid) 1	0.892
	CNS0095611	Silvery flower (tetraploid) 2	0.161
	CNS0095612	Silvery flower (tetraploid) 3	0.481
	CNS0095613	Golden flower (tetraploid) 1	0.337
	CNS0095614	Golden flower (tetraploid) 2	1.018
	CNS0095615	Golden flower (tetraploid) 3	0.047
CRA001975	CRR073297	Stem 1	0.840
	CRR073298	Stem 2	0.483
	CRR073299	Stem 3	0.282
	CRR073300	Leaf 1	0.405
	CRR073301	Leaf 2	0.833
	CRR073302	Leaf 3	0.612
	CRR073303	Juvenile bud 1	0.134
	CRR073304	Juvenile bud 2	0.366
	CRR073305	Juvenile bud 3	0.230
	CRR073306	Third green 1	0.059
	CRR073307	Third green 2	0.786
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.048
	CRR073312	Silver flowering 1	0.646
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	7.815
	CRR073316	Gold flowering 2	6.632
	CRR073317	Gold flowering 3	6.056
	CRR073318	Tawny withering 1	0.912
	CRR073319	Tawny withering 2	1.044
	CRR073320	Tawny withering 3	0.101