Detail information of GWHGAAZE015214


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007047847.16.96338E-86RING/U-box superfamily protein, putative [Theobroma cacao]
Swissprottr|Q8LFY8|ATL54_ARATH3E-39RING-H2 finger protein ATL54
trEMBLtr|A0A061DHM5|A0A061DHM5_THECC3E-86RING/U-box superfamily protein, putative {ECO:0000313|EMBL:EOX92004.1}
TAIR10AT1G72220.12E-34RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2796102527961819-
GWHAAZE00000004mRNA2796102527961819-
GWHAAZE00000004exon2796102527961819-
GWHAAZE00000004CDS2796102527961819-
Transcript Sequence

Network for GWHGAAZE015214

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_240831.70E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf31.432
SRR3591706second leaf38.398
SRR3591707mature leaf58.138
SRR3591708Shoot apex27.392
SRR3591709Stem79.579
SRR3591710White floral bud29.996
SRR3591711White flower89.478
SRR3591712Green floral bud20.226
SRR3591713Yellow flower83.686
SRP173429 SRR8316895Juvenile bud stage 36.101
SRR8316896Juvenile bud stage 26.016
SRR8316897Juvenile bud stage 22.916
SRR8316894Third green stage 10.493
SRR8316900Third green stage 15.182
SRR8316901Third green stage 19.294
SRR8316898Complete white stage 5.504
SRR8316899Complete white stage 48.294
SRR8316903Complete white stage 6.151
SRR8316902Silver flowering stage13.403
SRR8316904Silver flowering stage8.262
SRR8316905Silver flowering stage5.263
SRR8316906Gold flowering stage 24.706
SRR8316907Gold flowering stage 22.553
SRR8316908Gold flowering stage 36.568
SRP132670SRR6706286Control12.405
SRR6706287Light intensity 50%10.597
SRR6706288Light intensity 20%8.160
CNP0000432CNS0095592Slightly white alabastrum(diploid) 143.075
CNS0095593Slightly white alabastrum(diploid) 240.815
CNS0095594Slightly white alabastrum(diploid) 341.941
CNS0095595Whole white alabastrum(diploid) 223.636
CNS0095596Whole white alabastrum(diploid) 39.508
CNS0095597Whole white alabastrum(diploid) 419.739
CNS0095598Silvery flower (diploied) 171.530
CNS0095599Silvery flower (diploied) 253.726
CNS0095600Silvery flower (diploied) 326.694
CNS0095601Golden flower (diploid) 193.835
CNS0095602Golden flower (diploid) 261.877
CNS0095603Golden flower (diploid) 359.060
CNS0095604Slightly white alabastrum(tetraploid) 14.343
CNS0095605Slightly white alabastrum(tetraploid) 22.402
CNS0095606Slightly white alabastrum(tetraploid) 36.232
CNS0095607Whole white alabastrum(tetraploid) 14.445
CNS0095608Whole white alabastrum(tetraploid) 22.373
CNS0095609Whole white alabastrum(tetraploid) 35.505
CNS0095610Silvery flower (tetraploid) 115.067
CNS0095611Silvery flower (tetraploid) 29.780
CNS0095612Silvery flower (tetraploid) 320.547
CNS0095613Golden flower (tetraploid) 113.142
CNS0095614Golden flower (tetraploid) 216.690
CNS0095615Golden flower (tetraploid) 39.135
CRA001975CRR073297Stem 127.345
CRR073298Stem 233.529
CRR073299Stem 334.396
CRR073300Leaf 127.002
CRR073301Leaf 240.378
CRR073302Leaf 330.833
CRR073303Juvenile bud 131.448
CRR073304Juvenile bud 233.439
CRR073305Juvenile bud 331.301
CRR073306Third green 117.442
CRR073307Third green 211.885
CRR073308Third green 314.892
CRR073309Second white 116.980
CRR073310Second white 219.907
CRR073311Second white 313.549
CRR073312Silver flowering 156.363
CRR073313Silver flowering 237.585
CRR073314Silver flowering 334.759
CRR073315Gold flowering 190.435
CRR073316Gold flowering 2119.871
CRR073317Gold flowering 3115.460
CRR073318Tawny withering 183.198
CRR073319Tawny withering 277.099
CRR073320Tawny withering 361.881