Detail information of GWHGAAZE015215


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004288161.15.68563E-87PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Fragaria vesca subsp. vesca]
Swissprottr|P46668|ATHB6_ARATH3E-62Homeobox-leucine zipper protein ATHB-6
trEMBLtr|M5W009|M5W009_PRUPE3E-87Uncharacterized protein {ECO:0000313|EMBL:EMJ06706.1}
TAIR10AT2G22430.13E-51homeobox protein 6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2804951028050205+
GWHAAZE00000004mRNA2804951028050205+
GWHAAZE00000004exon2804951028049570+
GWHAAZE00000004exon2804977828050205+
GWHAAZE00000004CDS2804951028049570+
GWHAAZE00000004CDS2804977828050205+
Transcript Sequence

Network for GWHGAAZE015215

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00046.30Homeodomain591121.10E-16
PF02183.19HALZ1141498.60E-16
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyHB-HD-ZIP

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0003677molecular_functionDNA binding
GO:0043565molecular_functionsequence-specific DNA binding
GO:0003700molecular_functionDNA-binding transcription factor activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf41.712
SRR3591706second leaf70.596
SRR3591707mature leaf117.558
SRR3591708Shoot apex100.214
SRR3591709Stem94.504
SRR3591710White floral bud111.733
SRR3591711White flower168.559
SRR3591712Green floral bud46.073
SRR3591713Yellow flower77.624
SRP173429 SRR8316895Juvenile bud stage 65.511
SRR8316896Juvenile bud stage 82.084
SRR8316897Juvenile bud stage 48.437
SRR8316894Third green stage 18.159
SRR8316900Third green stage 24.063
SRR8316901Third green stage 24.833
SRR8316898Complete white stage 14.784
SRR8316899Complete white stage 47.755
SRR8316903Complete white stage 25.050
SRR8316902Silver flowering stage52.260
SRR8316904Silver flowering stage81.967
SRR8316905Silver flowering stage46.338
SRR8316906Gold flowering stage 152.662
SRR8316907Gold flowering stage 155.441
SRR8316908Gold flowering stage 189.828
SRP132670SRR6706286Control39.341
SRR6706287Light intensity 50%38.693
SRR6706288Light intensity 20%35.754
CNP0000432CNS0095592Slightly white alabastrum(diploid) 152.319
CNS0095593Slightly white alabastrum(diploid) 241.463
CNS0095594Slightly white alabastrum(diploid) 339.875
CNS0095595Whole white alabastrum(diploid) 226.991
CNS0095596Whole white alabastrum(diploid) 313.806
CNS0095597Whole white alabastrum(diploid) 427.926
CNS0095598Silvery flower (diploied) 1164.064
CNS0095599Silvery flower (diploied) 2128.810
CNS0095600Silvery flower (diploied) 3139.509
CNS0095601Golden flower (diploid) 1204.292
CNS0095602Golden flower (diploid) 2166.210
CNS0095603Golden flower (diploid) 3171.957
CNS0095604Slightly white alabastrum(tetraploid) 146.378
CNS0095605Slightly white alabastrum(tetraploid) 233.428
CNS0095606Slightly white alabastrum(tetraploid) 387.380
CNS0095607Whole white alabastrum(tetraploid) 129.470
CNS0095608Whole white alabastrum(tetraploid) 214.834
CNS0095609Whole white alabastrum(tetraploid) 329.650
CNS0095610Silvery flower (tetraploid) 1109.269
CNS0095611Silvery flower (tetraploid) 2109.092
CNS0095612Silvery flower (tetraploid) 3154.759
CNS0095613Golden flower (tetraploid) 156.809
CNS0095614Golden flower (tetraploid) 273.352
CNS0095615Golden flower (tetraploid) 333.242
CRA001975CRR073297Stem 1158.140
CRR073298Stem 2116.441
CRR073299Stem 3152.473
CRR073300Leaf 145.186
CRR073301Leaf 255.809
CRR073302Leaf 338.799
CRR073303Juvenile bud 127.330
CRR073304Juvenile bud 223.660
CRR073305Juvenile bud 339.259
CRR073306Third green 1207.410
CRR073307Third green 2246.770
CRR073308Third green 3230.481
CRR073309Second white 1154.544
CRR073310Second white 2261.669
CRR073311Second white 3214.439
CRR073312Silver flowering 1166.216
CRR073313Silver flowering 2134.245
CRR073314Silver flowering 3141.396
CRR073315Gold flowering 1184.278
CRR073316Gold flowering 2263.231
CRR073317Gold flowering 369.676
CRR073318Tawny withering 1302.455
CRR073319Tawny withering 2192.299
CRR073320Tawny withering 3220.948