Detail information of GWHGAAZE015248


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011072561.10PREDICTED: threonine synthase, chloroplastic [Sesamum indicum]
Swissprottr|Q9MT28|THRC_SOLTU0Threonine synthase, chloroplastic (Precursor)
trEMBLtr|A0A068TPA7|A0A068TPA7_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313|EMBL:CDO97872.1}
TAIR10AT4G29840.10Pyridoxal-5'-phosphate-dependent enzyme family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2883170728833056+
GWHAAZE00000004mRNA2883170728833056+
GWHAAZE00000004exon2883170728833056+
GWHAAZE00000004CDS2883170728833056+
Transcript Sequence

Network for GWHGAAZE015248

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00291.26PALP893961.30E-51
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01733thrC Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of amino acidsmap01230
Glycine, serine and threonine metabolismmap00260
Vitamin B6 metabolismmap00750

Gene Ontology

GO term OntologyName
GO:0009088biological_processthreonine biosynthetic process
GO:0006520biological_processcellular amino acid metabolic process
GO:0004795molecular_functionthreonine synthase activity
GO:0030170molecular_functionpyridoxal phosphate binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.421
SRR3591706second leaf2.468
SRR3591707mature leaf8.518
SRR3591708Shoot apex1.568
SRR3591709Stem3.650
SRR3591710White floral bud150.566
SRR3591711White flower419.014
SRR3591712Green floral bud3.231
SRR3591713Yellow flower462.391
SRP173429 SRR8316895Juvenile bud stage 0.917
SRR8316896Juvenile bud stage 1.462
SRR8316897Juvenile bud stage 1.318
SRR8316894Third green stage 0.327
SRR8316900Third green stage 0.535
SRR8316901Third green stage 0.525
SRR8316898Complete white stage 33.318
SRR8316899Complete white stage 0.985
SRR8316903Complete white stage 54.092
SRR8316902Silver flowering stage648.882
SRR8316904Silver flowering stage888.281
SRR8316905Silver flowering stage513.719
SRR8316906Gold flowering stage 1664.009
SRR8316907Gold flowering stage 1513.203
SRR8316908Gold flowering stage 1543.209
SRP132670SRR6706286Control2.350
SRR6706287Light intensity 50%2.012
SRR6706288Light intensity 20%0.809
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.102
CNS0095593Slightly white alabastrum(diploid) 21.042
CNS0095594Slightly white alabastrum(diploid) 32.658
CNS0095595Whole white alabastrum(diploid) 21.047
CNS0095596Whole white alabastrum(diploid) 30.101
CNS0095597Whole white alabastrum(diploid) 40.701
CNS0095598Silvery flower (diploied) 1269.229
CNS0095599Silvery flower (diploied) 2281.363
CNS0095600Silvery flower (diploied) 31260.138
CNS0095601Golden flower (diploid) 1287.097
CNS0095602Golden flower (diploid) 2786.628
CNS0095603Golden flower (diploid) 3766.682
CNS0095604Slightly white alabastrum(tetraploid) 10.247
CNS0095605Slightly white alabastrum(tetraploid) 20.114
CNS0095606Slightly white alabastrum(tetraploid) 30.678
CNS0095607Whole white alabastrum(tetraploid) 10.033
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.661
CNS0095610Silvery flower (tetraploid) 19.758
CNS0095611Silvery flower (tetraploid) 28.530
CNS0095612Silvery flower (tetraploid) 33.983
CNS0095613Golden flower (tetraploid) 18.982
CNS0095614Golden flower (tetraploid) 29.731
CNS0095615Golden flower (tetraploid) 34.525
CRA001975CRR073297Stem 14.806
CRR073298Stem 24.510
CRR073299Stem 34.331
CRR073300Leaf 13.194
CRR073301Leaf 23.165
CRR073302Leaf 35.251
CRR073303Juvenile bud 14.195
CRR073304Juvenile bud 24.411
CRR073305Juvenile bud 33.971
CRR073306Third green 12473.177
CRR073307Third green 21818.913
CRR073308Third green 31810.705
CRR073309Second white 12447.105
CRR073310Second white 22100.834
CRR073311Second white 32021.619
CRR073312Silver flowering 11945.608
CRR073313Silver flowering 22073.345
CRR073314Silver flowering 31928.004
CRR073315Gold flowering 11.328
CRR073316Gold flowering 21.012
CRR073317Gold flowering 31.972
CRR073318Tawny withering 110.890
CRR073319Tawny withering 220.888
CRR073320Tawny withering 38.551