Gene detail

Detail information of GWHGAAZE015291

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP03158.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q84WU9\|C3H64_ARATH	Zinc finger CCCH domain-containing protein 64
trEMBL	tr\|A0A068U6C3\|A0A068U6C3_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_9 {ECO:0000313\|EMBL:CDP03158.1}
TAIR10	AT5G56900.2	CwfJ-like family protein / zinc finger (CCCH-type) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	30329326	30340715	+
GWHAAZE00000004	mRNA	30329326	30340715	+
GWHAAZE00000004	exon	30329326	30329599	+
GWHAAZE00000004	exon	30330934	30331080	+
GWHAAZE00000004	exon	30331302	30331326	+
GWHAAZE00000004	exon	30332992	30333109	+
GWHAAZE00000004	exon	30335321	30335801	+
GWHAAZE00000004	exon	30336409	30336722	+
GWHAAZE00000004	exon	30339037	30339130	+
GWHAAZE00000004	exon	30339789	30339934	+
GWHAAZE00000004	exon	30340587	30340715	+
GWHAAZE00000004	CDS	30329326	30329599	+
GWHAAZE00000004	CDS	30330934	30331080	+
GWHAAZE00000004	CDS	30331302	30331326	+
GWHAAZE00000004	CDS	30332992	30333109	+
GWHAAZE00000004	CDS	30335321	30335801	+
GWHAAZE00000004	CDS	30336409	30336722	+
GWHAAZE00000004	CDS	30339037	30339130	+
GWHAAZE00000004	CDS	30339789	30339934	+
GWHAAZE00000004	CDS	30340587	30340715	+

Transcript Sequence
>GWHTAAZE015307 GTAAACAAATCAAGTGGTCCTTTCGATGCACTCCTTTGCGTGGGCCAATTTTTTCCGGACTCGCCGGATCGTCTCGAAGAGTTCACTGACTACATCGAAGGGCGGTCTAAAATACCTCTTCCGACGTACTTCATCGGCGATTATGGTGTTGGTGCTCCGAAGGTTTTGTCAGCGGCTTCAAAGGATAAGGGGAATCAAGGGTTCAAAATGGATGGTTTGAAGATATGTGACAATTTGTATTGGTTGAAAGGCAGTGGGAGTTTCACACTTAATGGGTTATCTGTAGCATACTTATCTGGCAGGCAATCAACAAGTGGTCAACTTTACGGAACATACAGTCAAGATGATGTTGATGCGCTGCGGGCCTTAGCTGAGGAACCTGGAATAATTGACATATTTCTAACATATCCTTGTTATATTCAGTTAGTTGCAGAGATCAAGCCCCGGTATCACATTGCCGGAACTAAGGGTGTATTCTACGCACGTGAACCTTATGCCAATGTTGATGCTGTCCATGTAACCCGTTTTATAGGCCTAGCTCCTGTTGGAAATACAGATAAACAGAAATTTATCCATGCAATTTCTCCTACTCCCGCATCCACCATGTCTGCTGCTGAAAAATCAAATAAACCACCAAATACTACTTCGTCTCCATATACAAATGTGGACAAAGAAACTCGTACTGAAGGAACGACAAAGAGGCCTAGTGATAGTGACTCTGACTCACAGTATTGGCGATATGATGTCTCTCAAAAGCGGCATAAACATGGAGATGGTTTGGGTCTGTGTTTCAAGTTTGTATCTTCAGGGTCTTGTCCACGAGGGGAGAATTGCCATTTCCGGCATGATGAAGATGCAAGGGAACACTCTATAAGAGGTGTGTGTTTTGATTTTATGAACAAAGGAAAATGCGAAAGAGGTCCAGATTGCAAATTTAAGCATAGTTTAGAAGATGAAGGCGAGAGCTTTTCTAACAGGAGACCTGGTTCTGGGAAGGCAAATGCCAACAGGTTTGAGTTTTATTTGATGATGAGTTTTCTAATTTTAATGATGTCCCTAACACTGAGTTTCAGGTCGAAGGAATGCTGGTTTTGTTTGTCAAGTCCAAATGTTGAATCACATCTAATCACCAGCATAGGAGAACATTGCTACTGTGCTCTTCCTAAAGGACCGCTAGTTCCAGATCATGTGCTTATATTACCCGTTGAACATTTGCCGAACACCCTTTCTTCACCACAAGAATGCGAAATTGAGTTAGTTACATTTCAGAATAGTCTCAGAACGTATTTCAAGAATAAAGGGAAAGAAGTTATTTTCTTCGAGTGGGTTTTCATACGGGGAACTCATGCTAATCTGCAGGCTGTTCCCGTTCCTACATCCAGAGCTCCGGCTGTTCAAGATATTTTTAATTTAGCTGCAGAAAAATTAGGATTCAAATTTGTAACATTGAAAAATGATAATAGTTCTGAAGGGAGAAAATCGTTGCGAATGCAGTTTGATAGACAATGCAGTTTGTTCTACGTAGAACTCCCTGGAGGCACCATACTAGTACATGATGTTAAAGAGAACGAGAAATTCCCGGTCCAATTTGGTCGCGAGGTTTTGGCGGGCTTACTGAACATGCCGGACCGAGCTGATTGGAAGAATTGTAAGCTTAGCAAAGAAGAAGAAACAAAAATGGTAGAAAAATTCAAGAACGATTTTGAAGAATATGATCCAAATCAATGA

Network for GWHGAAZE015291

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04677.16	CwfJ_C_1	358	469	7.40E-34
PF04676.15	CwfJ_C_2	492	572	7.20E-18

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.032
	SRR3591706	second leaf	9.782
	SRR3591707	mature leaf	10.599
	SRR3591708	Shoot apex	16.770
	SRR3591709	Stem	14.356
	SRR3591710	White floral bud	11.737
	SRR3591711	White flower	16.286
	SRR3591712	Green floral bud	13.106
	SRR3591713	Yellow flower	13.499
SRP173429	SRR8316895	Juvenile bud stage	10.834
	SRR8316896	Juvenile bud stage	13.835
	SRR8316897	Juvenile bud stage	6.572
	SRR8316894	Third green stage	7.103
	SRR8316900	Third green stage	14.332
	SRR8316901	Third green stage	14.676
	SRR8316898	Complete white stage	6.868
	SRR8316899	Complete white stage	22.646
	SRR8316903	Complete white stage	8.710
	SRR8316902	Silver flowering stage	8.199
	SRR8316904	Silver flowering stage	10.612
	SRR8316905	Silver flowering stage	4.921
	SRR8316906	Gold flowering stage	17.343
	SRR8316907	Gold flowering stage	14.321
	SRR8316908	Gold flowering stage	18.825
SRP132670	SRR6706286	Control	13.419
	SRR6706287	Light intensity 50%	15.539
	SRR6706288	Light intensity 20%	16.205
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.599
	CNS0095593	Slightly white alabastrum(diploid) 2	7.713
	CNS0095594	Slightly white alabastrum(diploid) 3	10.035
	CNS0095595	Whole white alabastrum(diploid) 2	10.237
	CNS0095596	Whole white alabastrum(diploid) 3	8.093
	CNS0095597	Whole white alabastrum(diploid) 4	9.035
	CNS0095598	Silvery flower (diploied) 1	14.862
	CNS0095599	Silvery flower (diploied) 2	11.641
	CNS0095600	Silvery flower (diploied) 3	15.633
	CNS0095601	Golden flower (diploid) 1	12.712
	CNS0095602	Golden flower (diploid) 2	15.330
	CNS0095603	Golden flower (diploid) 3	14.544
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.437
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.181
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.672
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.067
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.819
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.086
	CNS0095610	Silvery flower (tetraploid) 1	15.708
	CNS0095611	Silvery flower (tetraploid) 2	14.454
	CNS0095612	Silvery flower (tetraploid) 3	13.845
	CNS0095613	Golden flower (tetraploid) 1	11.014
	CNS0095614	Golden flower (tetraploid) 2	14.494
	CNS0095615	Golden flower (tetraploid) 3	12.567
CRA001975	CRR073297	Stem 1	17.763
	CRR073298	Stem 2	12.947
	CRR073299	Stem 3	9.583
	CRR073300	Leaf 1	12.960
	CRR073301	Leaf 2	12.445
	CRR073302	Leaf 3	7.487
	CRR073303	Juvenile bud 1	9.260
	CRR073304	Juvenile bud 2	6.510
	CRR073305	Juvenile bud 3	9.584
	CRR073306	Third green 1	3.291
	CRR073307	Third green 2	2.382
	CRR073308	Third green 3	3.625
	CRR073309	Second white 1	3.814
	CRR073310	Second white 2	5.108
	CRR073311	Second white 3	6.504
	CRR073312	Silver flowering 1	3.668
	CRR073313	Silver flowering 2	4.441
	CRR073314	Silver flowering 3	3.965
	CRR073315	Gold flowering 1	2.598
	CRR073316	Gold flowering 2	6.660
	CRR073317	Gold flowering 3	2.540
	CRR073318	Tawny withering 1	9.587
	CRR073319	Tawny withering 2	8.737
	CRR073320	Tawny withering 3	9.816