Detail information of GWHGAAZE015303


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002514144.14.683E-1711-aminocyclopropane-1-carboxylate oxidase, putative [Ricinus communis]
Swissprottr|Q9ZUN4|ACCO1_ARATH5E-1581-aminocyclopropane-1-carboxylate oxidase 1
trEMBLtr|B9RKA0|B9RKA0_RICCO2E-1711-aminocyclopropane-1-carboxylate oxidase, putative {ECO:0000313|EMBL:EEF48098.1}
TAIR10AT2G19590.14E-126ACC oxidase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene3092984130931725-
GWHAAZE00000004mRNA3092984130931725-
GWHAAZE00000004exon3092984130930423-
GWHAAZE00000004exon3093129830931521-
GWHAAZE00000004exon3093162030931725-
GWHAAZE00000004five_prime_UTR3093172230931725-
GWHAAZE00000004CDS3093162030931721-
GWHAAZE00000004CDS3093129830931521-
GWHAAZE00000004CDS3092984130930423-
Transcript Sequence

Network for GWHGAAZE015303

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14226.7DIOX_N3664.20E-16
PF03171.212OG-FeII_Oxy1592531.60E-24
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K05933E1.14.17.4 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Cysteine and methionine metabolismmap00270

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016491molecular_functionoxidoreductase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE015303.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3051015202530354045505560Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf56.026
SRR3591706second leaf1.715
SRR3591707mature leaf4.066
SRR3591708Shoot apex2.709
SRR3591709Stem20.902
SRR3591710White floral bud16.563
SRR3591711White flower10.381
SRR3591712Green floral bud16.492
SRR3591713Yellow flower0.298
SRP173429 SRR8316895Juvenile bud stage 3.272
SRR8316896Juvenile bud stage 3.619
SRR8316897Juvenile bud stage 2.239
SRR8316894Third green stage 1.725
SRR8316900Third green stage 4.701
SRR8316901Third green stage 3.888
SRR8316898Complete white stage 1.001
SRR8316899Complete white stage 24.046
SRR8316903Complete white stage 4.044
SRR8316902Silver flowering stage0.844
SRR8316904Silver flowering stage1.814
SRR8316905Silver flowering stage0.532
SRR8316906Gold flowering stage 1.971
SRR8316907Gold flowering stage 1.901
SRR8316908Gold flowering stage 5.899
SRP132670SRR6706286Control5.266
SRR6706287Light intensity 50%3.297
SRR6706288Light intensity 20%4.439
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.906
CNS0095593Slightly white alabastrum(diploid) 24.923
CNS0095594Slightly white alabastrum(diploid) 32.754
CNS0095595Whole white alabastrum(diploid) 25.168
CNS0095596Whole white alabastrum(diploid) 31.704
CNS0095597Whole white alabastrum(diploid) 43.263
CNS0095598Silvery flower (diploied) 16.042
CNS0095599Silvery flower (diploied) 21.217
CNS0095600Silvery flower (diploied) 34.113
CNS0095601Golden flower (diploid) 14.781
CNS0095602Golden flower (diploid) 25.192
CNS0095603Golden flower (diploid) 35.286
CNS0095604Slightly white alabastrum(tetraploid) 112.423
CNS0095605Slightly white alabastrum(tetraploid) 23.918
CNS0095606Slightly white alabastrum(tetraploid) 320.168
CNS0095607Whole white alabastrum(tetraploid) 12.131
CNS0095608Whole white alabastrum(tetraploid) 20.985
CNS0095609Whole white alabastrum(tetraploid) 30.972
CNS0095610Silvery flower (tetraploid) 18.236
CNS0095611Silvery flower (tetraploid) 22.281
CNS0095612Silvery flower (tetraploid) 33.763
CNS0095613Golden flower (tetraploid) 10.987
CNS0095614Golden flower (tetraploid) 224.510
CNS0095615Golden flower (tetraploid) 31.388
CRA001975CRR073297Stem 11.393
CRR073298Stem 22.579
CRR073299Stem 32.245
CRR073300Leaf 12.927
CRR073301Leaf 23.621
CRR073302Leaf 34.755
CRR073303Juvenile bud 14.467
CRR073304Juvenile bud 22.443
CRR073305Juvenile bud 34.237
CRR073306Third green 10.290
CRR073307Third green 20.244
CRR073308Third green 32.466
CRR073309Second white 10.000
CRR073310Second white 20.689
CRR073311Second white 30.186
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 11.783
CRR073316Gold flowering 20.242
CRR073317Gold flowering 30.000
CRR073318Tawny withering 13.700
CRR073319Tawny withering 23.091
CRR073320Tawny withering 310.267