Gene detail

Detail information of GWHGAAZE015307

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011093686.1	0	PREDICTED: protein arginine N-methyltransferase 1.1 [Sesamum indicum]
Swissprot	tr\|Q9SU94\|ANM11_ARATH	0	Protein arginine N-methyltransferase 1.1
trEMBL	tr\|K4DBW4\|K4DBW4_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc12g008760.1.1}
TAIR10	AT4G29510.1	2E-169	arginine methyltransferase 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	31007492	31015334	-
GWHAAZE00000004	mRNA	31007492	31015334	-
GWHAAZE00000004	exon	31015112	31015334	-
GWHAAZE00000004	exon	31012967	31013154	-
GWHAAZE00000004	exon	31011893	31011956	-
GWHAAZE00000004	exon	31011425	31011567	-
GWHAAZE00000004	exon	31010977	31011064	-
GWHAAZE00000004	exon	31008566	31008681	-
GWHAAZE00000004	exon	31008099	31008249	-
GWHAAZE00000004	exon	31007492	31007697	-
GWHAAZE00000004	CDS	31015112	31015334	-
GWHAAZE00000004	CDS	31012967	31013154	-
GWHAAZE00000004	CDS	31011893	31011956	-
GWHAAZE00000004	CDS	31011425	31011567	-
GWHAAZE00000004	CDS	31010977	31011064	-
GWHAAZE00000004	CDS	31008566	31008681	-
GWHAAZE00000004	CDS	31008099	31008249	-
GWHAAZE00000004	CDS	31007492	31007697	-

Transcript Sequence
>GWHTAAZE015323 ATGGATTGTGGAGAGAACAAATTACACAACGCAAAATCCACGAAAGTGAGATTCGAGTACGAAGACAGTGGCCAAGACGAAATCATTGAAGAAGCGGCTACTACTACTGGTAGCAGCTCGATTCTCGAGGAAGATTCCGCCATGTGTGAGCCCTCCGACGATTCCATGATCGGTGCCGACAAGACCAGCGCGGATTATTACTTCGATTCCTACTCCCACTTCGAAGTTATTTCTGATTTCTCATGCATTTTGCAGGAAATGTTGAAGGATGTGGTGAGAACCAAGACTTACCAAAATGTTATTTATAAGAACACCTTTTTATTCAAGGACAAAATAGTCCTTGATGTAGGGGCTGGGACCGGGATTTTGTCCCTTTTTTGTGCAAAAGCAGGGGCAAAACATGTTTATGCGGTTGAGTGCTCTCAGATGGCAGACATGGCACAAGAGATTGTTAAAGCAAATGGTTTCTCAAATGTGATAACAGTTTTGAAGGGGAAGATTGAAGAAATTGAGCTTCCAGTTCCTCAAGTGGATATCATTATTTCTGAGTGGATGGGATATTTCTTGCTGTATGAAAACATGTTAAATACAGTTTTGTATGCGCGTGATAAATGGCTAGTTAAGGATGGGCTTGTGCTGCCTGATAAAGCTTCTCTGTATGTAACTGCAATTGAGGATGCTGAGTACAAAGAAGACAAGATTGAATTTTGGAACAATGTGTATGGCTTTGACATGAGCTGCATCAGGAAGCAATCCATAATGGAACCTCTTGTTGACACAGTTGACCAGAATCTGATTGTTACAAACTCCCACTTGCTCAAGACGATGGACATTTCAAAGATGTCATCTGGAGATGCTTCCTTCACGGCTCCTTTTAAGCTTGTGGCAGAACGAGACGATTACATTCATGCTCTTGTTGCTTACTTCGATGTTGCTTTTACCAAGTGTCATAAAATGACTGGCTTTTCTACAGGGCCAAAATCAAGAGCTACGCATTGGAAGCAAACAGTACTCTACTTTGACGAAGTGATAACTATATGTGAAGGAGAGTCCATAATCGGAAACATGACCGTTACGCAGAACAAGAAGAATCCTCGTGATGTTGATATCACCCTCAAGTATTCTTTAAATGGTCGACGCTCCGTCATCTCAAGAACCCAACACTACAAAATGCGGTAA

Network for GWHGAAZE015307

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06325.14	PrmA	108	182	1.90E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11434	PRMT1	FoxO signaling pathway	map04068
K11434	PRMT1	Glucagon signaling pathway	map04922

Gene Ontology

GO term	Ontology	Name
GO:0006479	biological_process	protein methylation
GO:0008168	molecular_function	methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.976
	SRR3591706	second leaf	18.448
	SRR3591707	mature leaf	14.693
	SRR3591708	Shoot apex	50.423
	SRR3591709	Stem	37.107
	SRR3591710	White floral bud	34.255
	SRR3591711	White flower	53.603
	SRR3591712	Green floral bud	58.721
	SRR3591713	Yellow flower	36.510
SRP173429	SRR8316895	Juvenile bud stage	31.841
	SRR8316896	Juvenile bud stage	42.201
	SRR8316897	Juvenile bud stage	17.530
	SRR8316894	Third green stage	19.267
	SRR8316900	Third green stage	58.728
	SRR8316901	Third green stage	46.764
	SRR8316898	Complete white stage	16.858
	SRR8316899	Complete white stage	63.147
	SRR8316903	Complete white stage	21.693
	SRR8316902	Silver flowering stage	20.985
	SRR8316904	Silver flowering stage	26.804
	SRR8316905	Silver flowering stage	12.148
	SRR8316906	Gold flowering stage	35.888
	SRR8316907	Gold flowering stage	35.985
	SRR8316908	Gold flowering stage	45.023
SRP132670	SRR6706286	Control	33.396
	SRR6706287	Light intensity 50%	38.013
	SRR6706288	Light intensity 20%	42.517
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.801
	CNS0095593	Slightly white alabastrum(diploid) 2	35.224
	CNS0095594	Slightly white alabastrum(diploid) 3	24.718
	CNS0095595	Whole white alabastrum(diploid) 2	23.627
	CNS0095596	Whole white alabastrum(diploid) 3	26.664
	CNS0095597	Whole white alabastrum(diploid) 4	21.350
	CNS0095598	Silvery flower (diploied) 1	20.552
	CNS0095599	Silvery flower (diploied) 2	18.248
	CNS0095600	Silvery flower (diploied) 3	27.915
	CNS0095601	Golden flower (diploid) 1	17.261
	CNS0095602	Golden flower (diploid) 2	24.314
	CNS0095603	Golden flower (diploid) 3	22.924
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.895
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.648
	CNS0095606	Slightly white alabastrum(tetraploid) 3	49.968
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.034
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.554
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.214
	CNS0095610	Silvery flower (tetraploid) 1	35.493
	CNS0095611	Silvery flower (tetraploid) 2	29.784
	CNS0095612	Silvery flower (tetraploid) 3	24.176
	CNS0095613	Golden flower (tetraploid) 1	12.564
	CNS0095614	Golden flower (tetraploid) 2	19.190
	CNS0095615	Golden flower (tetraploid) 3	17.602
CRA001975	CRR073297	Stem 1	36.454
	CRR073298	Stem 2	30.941
	CRR073299	Stem 3	34.164
	CRR073300	Leaf 1	36.383
	CRR073301	Leaf 2	31.887
	CRR073302	Leaf 3	36.653
	CRR073303	Juvenile bud 1	34.901
	CRR073304	Juvenile bud 2	28.575
	CRR073305	Juvenile bud 3	36.007
	CRR073306	Third green 1	7.107
	CRR073307	Third green 2	9.703
	CRR073308	Third green 3	9.347
	CRR073309	Second white 1	19.949
	CRR073310	Second white 2	19.814
	CRR073311	Second white 3	15.311
	CRR073312	Silver flowering 1	13.770
	CRR073313	Silver flowering 2	9.252
	CRR073314	Silver flowering 3	5.134
	CRR073315	Gold flowering 1	16.011
	CRR073316	Gold flowering 2	18.137
	CRR073317	Gold flowering 3	13.521
	CRR073318	Tawny withering 1	30.088
	CRR073319	Tawny withering 2	32.435
	CRR073320	Tawny withering 3	41.945