Gene detail

Detail information of GWHGAAZE015323

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006371951.1	4.1478E-134	hypothetical protein POPTR_0018s06630g [Populus trichocarpa]
Swissprot	tr\|Q9C5D7\|CAMT3_ARATH	7E-119	Probable caffeoyl-CoA O-methyltransferase At4g26220
trEMBL	tr\|B9N5I7\|B9N5I7_POPTR	2E-134	Uncharacterized protein {ECO:0000313\|EMBL:ERP49748.1}
TAIR10	AT4G26220.1	1E-94	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	31559381	31562345	+
GWHAAZE00000004	mRNA	31559381	31562345	+
GWHAAZE00000004	exon	31559381	31559449	+
GWHAAZE00000004	exon	31559562	31559641	+
GWHAAZE00000004	exon	31560096	31560240	+
GWHAAZE00000004	exon	31560828	31560959	+
GWHAAZE00000004	exon	31562055	31562345	+
GWHAAZE00000004	CDS	31559381	31559449	+
GWHAAZE00000004	CDS	31559562	31559641	+
GWHAAZE00000004	CDS	31560096	31560240	+
GWHAAZE00000004	CDS	31560828	31560959	+
GWHAAZE00000004	CDS	31562055	31562345	+

Transcript Sequence
>GWHTAAZE015339 ATGGAGAATGAAAAAAAGAAAGCACCAGCTCCTTCTAAAGGATTACTACAGAGCGAAGAGTTGTATCGGTATATATTGGAGACTAGTGTGTATCCGCGTGAACCCGATCCTCTCAAGGAGCTAAGGGCTGCCACTGCAAATCATCCTTGGGCTTTGATGGGTACAGCACCAGATGCAGGGCAGATGATGGCCATGCTACTGAAGCTAGTTAATGCCAAAAAGACTATCGAAATTGGCGTTTTTACTGGATATTCCTTGCTCCTCACTGCCCTTACTATTCCTGATGATGGCAAGATTACGGCAGTAGATGTGAACAGAGAGTCATATGAGATAGGGTTGCCAATTATTAGAAAAGCCGGTGTGGAACATAAAATCAACTTTTGTCACTCTGAGGCTTTACCGGTTCTTGACAAGCTCTTGGAAGATCATGAGAATGAGGGAAGTTTTGACTTTGCTTTCGTCGATGCTGACAAGATTAGTTACTTGAAGTATCATGAGAGATTGATGAAATTATTAAAGGTTGGAGGGATAATTGTGTATGATAACACGCTTTGGGGAGGAACGGTGGCAATGGCAGAGGAGACGGTTACAGAGCGGAAGTTAGAGGGCAGGCATTGGACCATAGAGCTAAACAAGTCGCTAGCAGCCGATCCACGCATTCAAATTTCTCATGCTCCCTTGGGAGATGGAATCACTATATGTAGGCGTATCTACTGA

Network for GWHGAAZE015323

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01596.18	Methyltransf_3	27	237	2.90E-81

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00588	E2.1.1.104	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940
		Stilbenoid, diarylheptanoid and gingerol biosynthesis	map00945
		Flavonoid biosynthesis	map00941

Gene Ontology

GO term	Ontology	Name
GO:0008171	molecular_function	O-methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.797
	SRR3591706	second leaf	6.610
	SRR3591707	mature leaf	10.545
	SRR3591708	Shoot apex	6.731
	SRR3591709	Stem	11.811
	SRR3591710	White floral bud	7.453
	SRR3591711	White flower	6.239
	SRR3591712	Green floral bud	7.408
	SRR3591713	Yellow flower	2.229
SRP173429	SRR8316895	Juvenile bud stage	6.782
	SRR8316896	Juvenile bud stage	12.640
	SRR8316897	Juvenile bud stage	4.066
	SRR8316894	Third green stage	4.417
	SRR8316900	Third green stage	17.507
	SRR8316901	Third green stage	11.797
	SRR8316898	Complete white stage	14.197
	SRR8316899	Complete white stage	42.220
	SRR8316903	Complete white stage	19.290
	SRR8316902	Silver flowering stage	5.405
	SRR8316904	Silver flowering stage	9.206
	SRR8316905	Silver flowering stage	4.125
	SRR8316906	Gold flowering stage	6.081
	SRR8316907	Gold flowering stage	7.368
	SRR8316908	Gold flowering stage	10.449
SRP132670	SRR6706286	Control	11.931
	SRR6706287	Light intensity 50%	10.744
	SRR6706288	Light intensity 20%	12.282
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.028
	CNS0095593	Slightly white alabastrum(diploid) 2	7.376
	CNS0095594	Slightly white alabastrum(diploid) 3	5.044
	CNS0095595	Whole white alabastrum(diploid) 2	10.764
	CNS0095596	Whole white alabastrum(diploid) 3	9.278
	CNS0095597	Whole white alabastrum(diploid) 4	12.471
	CNS0095598	Silvery flower (diploied) 1	11.572
	CNS0095599	Silvery flower (diploied) 2	12.861
	CNS0095600	Silvery flower (diploied) 3	17.684
	CNS0095601	Golden flower (diploid) 1	8.151
	CNS0095602	Golden flower (diploid) 2	11.936
	CNS0095603	Golden flower (diploid) 3	10.509
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.557
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.323
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.426
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.333
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.495
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.648
	CNS0095610	Silvery flower (tetraploid) 1	31.103
	CNS0095611	Silvery flower (tetraploid) 2	37.677
	CNS0095612	Silvery flower (tetraploid) 3	36.054
	CNS0095613	Golden flower (tetraploid) 1	12.363
	CNS0095614	Golden flower (tetraploid) 2	16.490
	CNS0095615	Golden flower (tetraploid) 3	4.205
CRA001975	CRR073297	Stem 1	10.902
	CRR073298	Stem 2	12.611
	CRR073299	Stem 3	10.865
	CRR073300	Leaf 1	13.079
	CRR073301	Leaf 2	12.827
	CRR073302	Leaf 3	11.082
	CRR073303	Juvenile bud 1	13.121
	CRR073304	Juvenile bud 2	12.955
	CRR073305	Juvenile bud 3	12.893
	CRR073306	Third green 1	2.162
	CRR073307	Third green 2	5.177
	CRR073308	Third green 3	3.220
	CRR073309	Second white 1	1.464
	CRR073310	Second white 2	2.548
	CRR073311	Second white 3	0.511
	CRR073312	Silver flowering 1	0.898
	CRR073313	Silver flowering 2	0.204
	CRR073314	Silver flowering 3	0.276
	CRR073315	Gold flowering 1	12.030
	CRR073316	Gold flowering 2	16.869
	CRR073317	Gold flowering 3	11.389
	CRR073318	Tawny withering 1	9.004
	CRR073319	Tawny withering 2	8.070
	CRR073320	Tawny withering 3	6.598