Gene detail

Detail information of GWHGAAZE015327

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP33751.1	0	hypothetical protein JCGZ_07322 [Jatropha curcas]
Swissprot	tr\|Q9M0E1\|FBL77_ARATH	9E-146	F-box/LRR-repeat protein At4g29420
trEMBL	tr\|A0A067KC23\|A0A067KC23_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP33751.1}
TAIR10	AT4G29420.1	2E-111	F-box/RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	31605533	31609523	+
GWHAAZE00000004	mRNA	31605533	31609523	+
GWHAAZE00000004	exon	31605533	31605711	+
GWHAAZE00000004	exon	31606709	31606983	+
GWHAAZE00000004	exon	31608622	31609523	+
GWHAAZE00000004	CDS	31605533	31605711	+
GWHAAZE00000004	CDS	31606709	31606983	+
GWHAAZE00000004	CDS	31608622	31609523	+

Transcript Sequence
>GWHTAAZE015343 ATGGATAATCTCCCCTCGCATCTCATCCTCGAAATCCTTTCTCGAATCGACGACTCCTTCTCCCTCTCTCGCTGCCGCCTCGCCTCCAAAACCCTAAATTCCCTCGCCGATGAAATCCCCTCCATCAACCTTCAATGCTCTTTCGATCGATACATCAAATCTCGCTCACCCGAAACCAGGTCAGAAACGACGCCTTTTAAAACGATCTTCAATAACTTGATCAAGAATTCGAGACTGGTAGAGTGTGTGCGGATTGGTATTGAGAAGCCGCTTCGAGTTGTGTCTTATGACGATGTAGAGGATGAGTCTGATGATCTGTATTTAAGTGATGAGAAGTTCGTGGAAGAGTGGTTGCCCAAGGTTTGTGAGAGGTTGAAGTCAGTTGAGATATCGGATTTTTGGATTCAGTCTTGCTGGAGACGGACGGAGGTTTTGTCTCTCATTTCTTCCCACTGTCACAATCTTATTGAGCTAGACGTGAAGAATGCCTGGCTGTCCGTAGATAATTTGAACCCGATGCCCATGCTCACAAGTTTGACTCTCGAATTCATAAGACTAGACGATGAAAACTTAAACAAGGTAAACGATTGCTTCCCTTCTCTTCGAGTTCTCAATCTGATAGGCGTTGGAGGACTCAAAGAACCCAAAATCCATCTCTTGAACCTTAAAACCTGTCAATGGACGGTATCCAATGCTCCATCATCCCTAACTATACTTGCACCGAATCTTTTTCAACTTAAACTCAAGTGTGTAAAGCCAAGGGAACTTGTTATTGAAGCTCCATTGTTGTCTGATCTCAATCTTACCCTCGAGAAGGCAAGTGAGTTTAAGGTGAAAGAGTTTAGTTGTTTGAAAATGCTTCGGCTTGAATCAAGAGACCTTTCTAACCTACTTTCCTCGTTCCCATTTGGTACAACAATCGAAACCCTAATAGTAGACTCGACGAAATCGGCAGATTCGGTCCGATCAAGTCACTTGATCAAGATTAGCCTTGAGGATTTGTTCAATAAGTTTCCAAACTTGAGCTCTCTTACGTTGGGGTCTGGTGTTTGGTCCGAATTAGAGGCAAGTCCATTCTTAGAAGGCTTGGAAATTAACAATAAGATAAAGGGGTTGAAGGAAATAATCGCATATTTAGTAATAAATGACATTGAGACAACACTTTCATTGATTTTTCATGTTTTAGAAAGATTACCGAGCTTGTCAAACGCGGGGTTTCTTGTTCATCGTGATGTTGATTCTAGTGTCACTAGTAGCCTCATCTCGAGGTGTGTGGCTCGTTGTTCAAGTGTGAGATGGAGATGGGGAATGTGGAAAGAAAGAATGAAAGATGGTTGGATTTCTAATGGCATTTAA

Network for GWHGAAZE015327

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.802
	SRR3591706	second leaf	4.110
	SRR3591707	mature leaf	8.348
	SRR3591708	Shoot apex	5.294
	SRR3591709	Stem	16.143
	SRR3591710	White floral bud	10.829
	SRR3591711	White flower	13.187
	SRR3591712	Green floral bud	11.534
	SRR3591713	Yellow flower	11.787
SRP173429	SRR8316895	Juvenile bud stage	3.723
	SRR8316896	Juvenile bud stage	5.725
	SRR8316897	Juvenile bud stage	2.824
	SRR8316894	Third green stage	2.557
	SRR8316900	Third green stage	7.089
	SRR8316901	Third green stage	6.082
	SRR8316898	Complete white stage	3.244
	SRR8316899	Complete white stage	7.500
	SRR8316903	Complete white stage	7.423
	SRR8316902	Silver flowering stage	4.636
	SRR8316904	Silver flowering stage	6.281
	SRR8316905	Silver flowering stage	3.412
	SRR8316906	Gold flowering stage	11.485
	SRR8316907	Gold flowering stage	9.684
	SRR8316908	Gold flowering stage	10.926
SRP132670	SRR6706286	Control	4.795
	SRR6706287	Light intensity 50%	5.080
	SRR6706288	Light intensity 20%	4.339
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.527
	CNS0095593	Slightly white alabastrum(diploid) 2	2.232
	CNS0095594	Slightly white alabastrum(diploid) 3	1.935
	CNS0095595	Whole white alabastrum(diploid) 2	3.218
	CNS0095596	Whole white alabastrum(diploid) 3	3.720
	CNS0095597	Whole white alabastrum(diploid) 4	3.425
	CNS0095598	Silvery flower (diploied) 1	2.565
	CNS0095599	Silvery flower (diploied) 2	2.222
	CNS0095600	Silvery flower (diploied) 3	8.582
	CNS0095601	Golden flower (diploid) 1	2.739
	CNS0095602	Golden flower (diploid) 2	8.018
	CNS0095603	Golden flower (diploid) 3	8.156
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.626
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.139
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.787
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.998
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.661
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.935
	CNS0095610	Silvery flower (tetraploid) 1	8.717
	CNS0095611	Silvery flower (tetraploid) 2	9.248
	CNS0095612	Silvery flower (tetraploid) 3	7.410
	CNS0095613	Golden flower (tetraploid) 1	4.385
	CNS0095614	Golden flower (tetraploid) 2	7.502
	CNS0095615	Golden flower (tetraploid) 3	9.628
CRA001975	CRR073297	Stem 1	8.072
	CRR073298	Stem 2	6.418
	CRR073299	Stem 3	8.437
	CRR073300	Leaf 1	7.410
	CRR073301	Leaf 2	6.719
	CRR073302	Leaf 3	6.965
	CRR073303	Juvenile bud 1	7.765
	CRR073304	Juvenile bud 2	5.076
	CRR073305	Juvenile bud 3	6.676
	CRR073306	Third green 1	4.996
	CRR073307	Third green 2	5.973
	CRR073308	Third green 3	4.196
	CRR073309	Second white 1	6.123
	CRR073310	Second white 2	7.319
	CRR073311	Second white 3	5.985
	CRR073312	Silver flowering 1	4.476
	CRR073313	Silver flowering 2	4.084
	CRR073314	Silver flowering 3	4.385
	CRR073315	Gold flowering 1	3.949
	CRR073316	Gold flowering 2	7.836
	CRR073317	Gold flowering 3	4.751
	CRR073318	Tawny withering 1	6.972
	CRR073319	Tawny withering 2	6.541
	CRR073320	Tawny withering 3	4.407